Variant report

Variant	rs2859228
Chromosome Location	chr1:172613241-172613242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172601508..172603018-chr1:172612247..172614358,2	K562	blood:
2	chr1:172605365..172608038-chr1:172613120..172614663,2	K562	blood:
3	chr1:172607939..172610004-chr1:172610996..172613458,2	MCF-7	breast:
4	chr1:172605365..172608863-chr1:172611865..172614663,3	K562	blood:
5	chr1:172502322..172503893-chr1:172611995..172613517,2	K562	blood:
6	chr1:172612180..172615126-chr1:172623490..172625142,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10157519	0.84[CEU][hapmap]
rs1041902	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1041903	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10798040	0.84[CEU][hapmap]
rs10912097	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1492899	0.83[CHB][hapmap]
rs1894626	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs2639619	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2639620	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2639621	0.97[ASN][1000 genomes]
rs2859224	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859225	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859226	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859229	0.83[CHB][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs2859237	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2859242	0.83[JPT][hapmap]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172608800-172614000	Enhancers	Primary T cells fromperipheralblood	blood
2	chr1:172608800-172614400	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr1:172608800-172615000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:172608800-172624000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:172609000-172614800	Enhancers	Primary T cells from cord blood	blood
6	chr1:172609000-172614800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr1:172609000-172614800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:172609800-172616000	Weak transcription	NH-A	brain
9	chr1:172610600-172614000	Enhancers	Fetal Thymus	thymus
10	chr1:172611400-172613800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:172611400-172613800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:172611800-172613400	Enhancers	Osteobl	bone
13	chr1:172612000-172613400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:172612000-172613400	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:172612000-172613400	Enhancers	Thymus	Thymus
16	chr1:172612000-172613400	Enhancers	NHLF	lung
17	chr1:172612000-172613600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:172612000-172613600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:172612000-172613600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr1:172612000-172613600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr1:172612000-172613600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:172612000-172613600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr1:172612000-172613600	Enhancers	Esophagus	oesophagus
24	chr1:172612000-172613600	Enhancers	Left Ventricle	heart
25	chr1:172612000-172613600	Enhancers	HSMM	muscle
26	chr1:172612000-172613800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:172612200-172613400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr1:172612200-172613400	Enhancers	K562	blood
29	chr1:172612200-172613600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:172612200-172613600	Enhancers	Primary B cells from peripheral blood	blood
31	chr1:172612200-172613600	Enhancers	GM12878-XiMat	blood
32	chr1:172612400-172613400	Enhancers	Primary B cells from cord blood	blood
33	chr1:172612400-172613400	Flanking Active TSS	Dnd41	blood
34	chr1:172612400-172613600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr1:172612600-172613400	Enhancers	Lung	lung
36	chr1:172612800-172614400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr1:172613000-172613400	Enhancers	Primary hematopoietic stem cells	blood
38	chr1:172613000-172613400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:172613000-172613400	Enhancers	HepG2	liver
40	chr1:172613000-172614000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr1:172613000-172614000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr1:172613000-172615400	Weak transcription	Right Ventricle	heart
43	chr1:172613000-172616400	Weak transcription	Right Atrium	heart
44	chr1:172613000-172617200	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr1:172613200-172613400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:172613200-172614200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr1:172613200-172614800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr1:172613200-172620200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:172613200-172620200	Weak transcription	HMEC	breast

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