Variant report

Variant	rs28593311
Chromosome Location	chr14:37519121-37519122
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37513736..37515871-chr14:37516258..37519151,2	K562	blood:
2	chr14:37517069..37519596-chr14:37522769..37524947,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10132328	0.85[ASN][1000 genomes]
rs10133673	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10136238	0.94[ASN][1000 genomes]
rs10141752	0.94[ASN][1000 genomes]
rs10142021	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10145879	0.86[AFR][1000 genomes]
rs10220281	0.84[ASN][1000 genomes]
rs10220604	0.93[ASN][1000 genomes]
rs10483485	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12050169	0.83[ASN][1000 genomes]
rs12050463	0.84[ASN][1000 genomes]
rs12889634	0.85[ASN][1000 genomes]
rs17106031	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17106189	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17106209	0.94[ASN][1000 genomes]
rs17106216	0.94[ASN][1000 genomes]
rs17106275	0.85[ASN][1000 genomes]
rs17106290	0.85[ASN][1000 genomes]
rs17106291	0.85[ASN][1000 genomes]
rs17841015	0.94[ASN][1000 genomes]
rs1884220	0.85[ASN][1000 genomes]
rs1884221	0.83[ASN][1000 genomes]
rs1884775	0.94[ASN][1000 genomes]
rs1884777	0.85[ASN][1000 genomes]
rs1950376	0.85[ASN][1000 genomes]
rs1950814	0.94[ASN][1000 genomes]
rs1955760	0.85[ASN][1000 genomes]
rs1956423	0.94[ASN][1000 genomes]
rs1956424	0.94[ASN][1000 genomes]
rs1998121	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2057171	0.85[ASN][1000 genomes]
rs2415379	0.91[ASN][1000 genomes]
rs2415380	0.91[ASN][1000 genomes]
rs28517624	0.94[ASN][1000 genomes]
rs4356385	0.89[ASN][1000 genomes]
rs7140991	0.88[ASN][1000 genomes]
rs74045463	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs74045464	0.86[AFR][1000 genomes]
rs74045478	0.85[ASN][1000 genomes]
rs8008478	0.85[ASN][1000 genomes]
rs8014186	0.83[ASN][1000 genomes]
rs8019489	0.91[ASN][1000 genomes]
rs8020153	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37518600-37520000	Weak transcription	HUVEC	blood vessel
2	chr14:37518800-37520200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:37518800-37520400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:37518800-37520800	Weak transcription	Pancreas	Pancrea

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