Variant report
| Variant | rs28594876 |
|---|---|
| Chromosome Location | chr8:11060839-11060840 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MTMR9-3 | chr8:11058877-11061136 | NONHSAT125041 |
| 2 | lnc-MTMR9-3 | chr8:11060474-11061180 | ENSG00000270076.1 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| XKR6 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10098160 | 1.00[AFR][1000 genomes] |
| rs10108967 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11984987 | 1.00[EUR][1000 genomes] |
| rs11986294 | 1.00[EUR][1000 genomes] |
| rs11989218 | 1.00[AFR][1000 genomes] |
| rs11991271 | 1.00[EUR][1000 genomes] |
| rs11992161 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28417024 | 1.00[EUR][1000 genomes] |
| rs28484940 | 1.00[AFR][1000 genomes] |
| rs28516856 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28519973 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28579363 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28667475 | 0.88[AFR][1000 genomes] |
| rs28688244 | 1.00[EUR][1000 genomes] |
| rs28712616 | 1.00[EUR][1000 genomes] |
| rs6651506 | 1.00[EUR][1000 genomes] |
| rs6651507 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035072 | chr8:10819444-11480692 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv539473 | chr8:10819444-11480692 | Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 3 | esv1815171 | chr8:10940039-11128712 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 4 | nsv529399 | chr8:10970091-11805960 | Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
| 5 | nsv831233 | chr8:11046854-11234384 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:11059800-11061800 | Weak transcription | HSMMtube | muscle |
| 2 | chr8:11059800-11067400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
