Variant report

Variant	rs28605137
Chromosome Location	chr4:120761564-120761565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1027690	0.88[ASN][1000 genomes]
rs13114426	0.88[ASN][1000 genomes]
rs13142600	0.88[ASN][1000 genomes]
rs1503536	0.99[ASN][1000 genomes]
rs1566784	1.00[ASN][1000 genomes]
rs1566785	1.00[ASN][1000 genomes]
rs16997613	0.98[ASN][1000 genomes]
rs35200040	0.95[ASN][1000 genomes]
rs35374249	0.98[ASN][1000 genomes]
rs36089364	1.00[ASN][1000 genomes]
rs4293770	0.98[ASN][1000 genomes]
rs4365709	0.88[ASN][1000 genomes]
rs62319691	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719906	0.99[ASN][1000 genomes]
rs722766	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120758600-120794000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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