Variant report

Variant	rs28607250
Chromosome Location	chr7:101805679-101805680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SH2B2-3	chr7:101805576-101805696	NONHSAT122478

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10227131	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248171	0.94[ASN][1000 genomes]
rs1107462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1107463	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1297620	0.94[ASN][1000 genomes]
rs17135072	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17135077	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2268029	0.94[ASN][1000 genomes]
rs2268031	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2268032	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28715132	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs392606	0.94[ASN][1000 genomes]
rs57242832	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57517296	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57634989	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58179454	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59140055	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60345263	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60679727	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60795390	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61170107	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61212564	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61232541	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61484374	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6976246	0.94[ASN][1000 genomes]
rs73408014	0.89[EUR][1000 genomes]
rs7788329	0.94[ASN][1000 genomes]
rs7800374	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9691705	0.94[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
2	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:101784800-101814400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:101789800-101812800	Weak transcription	Brain Angular Gyrus	brain
7	chr7:101790600-101811400	Weak transcription	Brain Substantia Nigra	brain
8	chr7:101790800-101806600	Weak transcription	Psoas Muscle	Psoas
9	chr7:101790800-101811800	Weak transcription	Osteobl	bone
10	chr7:101790800-101812600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:101791000-101812000	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:101793200-101806600	Weak transcription	Colonic Mucosa	Colon
13	chr7:101793800-101812600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:101794800-101816800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr7:101796000-101810800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr7:101797000-101806000	Weak transcription	Spleen	Spleen
17	chr7:101797000-101814200	Weak transcription	Hela-S3	cervix
18	chr7:101797200-101806000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr7:101797200-101806000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:101797200-101806200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr7:101797200-101807200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:101797200-101807600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:101797200-101807600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:101797200-101808000	Weak transcription	NHLF	lung
25	chr7:101797200-101812000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr7:101797200-101812600	Weak transcription	Stomach Mucosa	stomach
27	chr7:101797200-101812800	Weak transcription	Brain Germinal Matrix	brain
28	chr7:101797200-101812800	Weak transcription	HSMM	muscle
29	chr7:101797200-101814000	Weak transcription	GM12878-XiMat	blood
30	chr7:101797200-101818400	Weak transcription	Colon Smooth Muscle	Colon
31	chr7:101797200-101818600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:101797200-101821400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:101797200-101827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:101797200-101832000	Weak transcription	Fetal Heart	heart
35	chr7:101797400-101806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr7:101797400-101806800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:101797400-101807000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr7:101797400-101807200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr7:101797400-101809600	Weak transcription	HSMMtube	muscle
40	chr7:101797400-101811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:101797800-101852200	Weak transcription	NHEK	skin
42	chr7:101798000-101807000	Strong transcription	Dnd41	blood
43	chr7:101798200-101812800	Weak transcription	Brain Anterior Caudate	brain
44	chr7:101798400-101809400	Weak transcription	Fetal Brain Female	brain
45	chr7:101798600-101812600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:101799800-101812600	Weak transcription	Fetal Kidney	kidney
47	chr7:101799800-101815000	Weak transcription	K562	blood
48	chr7:101800000-101811600	Strong transcription	Fetal Stomach	stomach
49	chr7:101800000-101812800	Weak transcription	NHDF-Ad	bronchial
50	chr7:101800200-101806400	Weak transcription	Placenta Amnion	Placenta Amnion

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