Variant report

Variant	rs28608114
Chromosome Location	chr14:97081622-97081623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10140205	0.90[EUR][1000 genomes]
rs10140933	0.90[ASN][1000 genomes]
rs10143853	0.90[EUR][1000 genomes]
rs10150253	0.86[EUR][1000 genomes]
rs11849817	0.91[ASN][1000 genomes]
rs12435870	0.91[ASN][1000 genomes]
rs17094199	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17094214	0.91[ASN][1000 genomes]
rs28528752	0.86[EUR][1000 genomes]
rs35780247	0.89[ASN][1000 genomes]
rs61401709	0.90[EUR][1000 genomes]
rs7142607	0.89[ASN][1000 genomes]
rs7151969	0.86[EUR][1000 genomes]
rs7153173	0.86[EUR][1000 genomes]
rs7153875	0.85[EUR][1000 genomes]
rs8009600	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042409	chr14:96832303-97115668	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv542178	chr14:96832303-97115668	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv431026	chr14:97079926-97163106	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97080200-97084000	Enhancers	Fetal Brain Male	brain
2	chr14:97080400-97082800	Enhancers	Brain Germinal Matrix	brain
3	chr14:97080600-97083400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:97081200-97081800	Enhancers	Spleen	Spleen
5	chr14:97081200-97082600	Weak transcription	Pancreas	Pancrea
6	chr14:97081400-97083600	Enhancers	Fetal Brain Female	brain
7	chr14:97081600-97082000	Enhancers	Brain Hippocampus Middle	brain
8	chr14:97081600-97090200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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