Variant report

Variant	rs28612386
Chromosome Location	chr4:142031522-142031523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10001083	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029462	0.81[AFR][1000 genomes]
rs13435113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28372551	0.92[AFR][1000 genomes]
rs28433132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28438876	0.81[AFR][1000 genomes]
rs28465245	0.81[AFR][1000 genomes]
rs28556956	1.00[AMR][1000 genomes]
rs28728280	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9654251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880169	chr4:142005573-142038481	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142000800-142031600	Weak transcription	Right Ventricle	heart
2	chr4:142013000-142040400	Weak transcription	Psoas Muscle	Psoas
3	chr4:142026200-142039200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:142028200-142032400	Enhancers	Fetal Heart	heart
5	chr4:142028600-142042400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:142031200-142031800	Enhancers	Left Ventricle	heart
7	chr4:142031400-142031600	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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