Variant report

Variant	rs28615207
Chromosome Location	chr4:107248029-107248030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107246333..107250100-chr4:107250113..107253546,3	K562	blood:
2	chr4:107246333..107250100-chr4:107250113..107253546,4	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10009873	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10010622	0.90[AMR][1000 genomes]
rs10010712	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10026011	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10033060	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11544776	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11729801	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28408532	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28432701	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28597815	0.90[AMR][1000 genomes]
rs28600674	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28648796	0.90[AMR][1000 genomes]
rs28668834	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28722963	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28786397	0.90[AMR][1000 genomes]
rs28786712	0.90[AMR][1000 genomes]
rs28823294	0.90[AMR][1000 genomes]
rs28843476	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28848568	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28852980	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28857517	0.90[AMR][1000 genomes]
rs28890246	0.90[AMR][1000 genomes]
rs6820647	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7356173	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7682001	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9996386	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107238600-107258000	Weak transcription	Gastric	stomach
2	chr4:107238600-107258400	Weak transcription	Spleen	Spleen
3	chr4:107238600-107258600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:107238600-107259600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:107238600-107259600	Weak transcription	Pancreas	Pancrea
6	chr4:107238800-107259000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:107239000-107248200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:107239000-107252400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:107239000-107252800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:107239000-107259200	Weak transcription	Fetal Brain Male	brain
11	chr4:107239200-107248800	Weak transcription	Fetal Heart	heart
12	chr4:107239200-107258400	Weak transcription	Aorta	Aorta
13	chr4:107239200-107259400	Weak transcription	Psoas Muscle	Psoas
14	chr4:107239400-107248200	Weak transcription	Brain Angular Gyrus	brain
15	chr4:107239400-107248200	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:107239400-107248600	Weak transcription	HSMMtube	muscle
17	chr4:107239400-107255200	Weak transcription	Stomach Mucosa	stomach
18	chr4:107239600-107249200	Weak transcription	NHLF	lung
19	chr4:107240000-107248200	Weak transcription	Hela-S3	cervix
20	chr4:107240200-107248800	Weak transcription	Brain Substantia Nigra	brain
21	chr4:107240600-107248600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr4:107240800-107253000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:107242200-107258600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:107242800-107248800	Weak transcription	Brain Germinal Matrix	brain
25	chr4:107242800-107257800	Weak transcription	Esophagus	oesophagus
26	chr4:107242800-107258400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:107242800-107259400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:107243400-107257800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:107243400-107258000	Weak transcription	Lung	lung
30	chr4:107243400-107271400	Weak transcription	Right Ventricle	heart
31	chr4:107243800-107259600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr4:107244000-107255400	Weak transcription	Fetal Stomach	stomach
33	chr4:107244000-107258000	Weak transcription	Small Intestine	intestine
34	chr4:107244200-107250800	Weak transcription	Fetal Intestine Small	intestine
35	chr4:107244200-107258400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:107245200-107248400	Weak transcription	GM12878-XiMat	blood
37	chr4:107245600-107259200	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr4:107245800-107257600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr4:107245800-107258400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr4:107245800-107259000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr4:107245800-107261800	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr4:107245800-107262200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr4:107245800-107263000	Strong transcription	Dnd41	blood
44	chr4:107246000-107250000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr4:107246000-107251400	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr4:107246000-107258400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr4:107246000-107262000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr4:107246200-107249600	Strong transcription	Liver	Liver
49	chr4:107246200-107250600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr4:107246200-107250800	Strong transcription	A549	lung

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