Variant report

Variant	rs28621642
Chromosome Location	chr8:99421834-99421835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99410786..99412684-chr8:99420186..99422700,2	MCF-7	breast:
2	chr8:99417664..99419680-chr8:99421751..99424091,2	K562	blood:
3	chr8:99418180..99421038-chr8:99421150..99423251,2	K562	blood:
4	chr8:99420145..99422395-chr8:99425368..99427405,3	MCF-7	breast:
5	chr8:99420942..99422686-chr8:99431232..99433617,2	K562	blood:

Variant related genes	Relation type
ENSG00000253468	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10282835	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785588	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12386830	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277523	1.00[ASN][1000 genomes]
rs16896995	1.00[ASN][1000 genomes]
rs16897028	1.00[ASN][1000 genomes]
rs16897050	1.00[ASN][1000 genomes]
rs16897058	1.00[ASN][1000 genomes]
rs16897069	1.00[ASN][1000 genomes]
rs34018826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4554439	1.00[ASN][1000 genomes]
rs4574821	1.00[ASN][1000 genomes]
rs4615538	1.00[ASN][1000 genomes]
rs55793219	1.00[ASN][1000 genomes]
rs55807423	1.00[ASN][1000 genomes]
rs55921088	1.00[ASN][1000 genomes]
rs55947965	1.00[ASN][1000 genomes]
rs56185259	1.00[ASN][1000 genomes]
rs56214625	1.00[ASN][1000 genomes]
rs56246659	1.00[ASN][1000 genomes]
rs6982282	1.00[ASN][1000 genomes]
rs6982285	1.00[ASN][1000 genomes]
rs72666612	1.00[ASN][1000 genomes]
rs72666616	1.00[ASN][1000 genomes]
rs72666618	1.00[ASN][1000 genomes]
rs72666619	1.00[ASN][1000 genomes]
rs72666623	1.00[ASN][1000 genomes]
rs72666624	1.00[ASN][1000 genomes]
rs72666625	1.00[ASN][1000 genomes]
rs72666629	1.00[ASN][1000 genomes]
rs72666633	1.00[ASN][1000 genomes]
rs72666638	1.00[ASN][1000 genomes]
rs72666642	1.00[ASN][1000 genomes]
rs72666643	1.00[ASN][1000 genomes]
rs72666649	1.00[ASN][1000 genomes]
rs72666652	1.00[ASN][1000 genomes]
rs72666655	1.00[ASN][1000 genomes]
rs72666661	1.00[ASN][1000 genomes]
rs72666665	1.00[ASN][1000 genomes]
rs72666666	1.00[ASN][1000 genomes]
rs72666673	1.00[ASN][1000 genomes]
rs72666676	1.00[ASN][1000 genomes]
rs72666678	1.00[ASN][1000 genomes]
rs73699303	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835203	1.00[ASN][1000 genomes]
rs7839115	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842869	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99416000-99430600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:99416600-99424400	Weak transcription	Ovary	ovary
3	chr8:99418800-99423200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:99419600-99425200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:99420200-99425600	Weak transcription	Fetal Heart	heart
6	chr8:99420600-99424800	Enhancers	NHDF-Ad	bronchial
7	chr8:99420800-99422000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:99421400-99422000	Enhancers	HSMMtube	muscle
9	chr8:99421400-99422200	Enhancers	HSMM	muscle
10	chr8:99421400-99422600	Enhancers	NHLF	lung
11	chr8:99421400-99424400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:99421600-99422000	Enhancers	Gastric	stomach
13	chr8:99421600-99422400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:99421600-99422600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:99421600-99422600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:99421600-99422800	Enhancers	Osteobl	bone

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