The 2.0 version of rSNPBase

Variant report

Variant rs28622220
Chromosome Location chr4:125627585-125627586
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:125593000-125631200 Weak transcription Esophagus oesophagus
2 chr4:125593400-125629800 Weak transcription Aorta Aorta
3 chr4:125593400-125629800 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr4:125593400-125631200 Weak transcription Thymus Thymus
5 chr4:125593600-125629600 Weak transcription HSMMtube muscle
6 chr4:125593600-125631000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr4:125594200-125631200 Weak transcription Fetal Thymus thymus
8 chr4:125597400-125631200 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr4:125599200-125627800 Weak transcription Placenta Placenta
10 chr4:125606000-125631000 Weak transcription Placenta Amnion Placenta Amnion
11 chr4:125606200-125629600 Weak transcription K562 blood
12 chr4:125607800-125631200 Weak transcription Left Ventricle heart
13 chr4:125608200-125629800 Weak transcription ES-I3 Cell Line embryonic stem cell
14 chr4:125611400-125629800 Weak transcription Fetal Kidney kidney
15 chr4:125611600-125632400 Weak transcription Stomach Mucosa stomach
16 chr4:125616600-125631200 Weak transcription Lung lung
17 chr4:125616800-125629600 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr4:125616800-125631200 Weak transcription H9 Cell Line embryonic stem cell
19 chr4:125616800-125631200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr4:125617000-125630200 Weak transcription Brain Hippocampus Middle brain
21 chr4:125617800-125629600 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr4:125618800-125628800 Weak transcription Dnd41 blood
23 chr4:125619200-125629600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr4:125619400-125627800 Weak transcription NHDF-Ad bronchial
25 chr4:125619400-125628200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr4:125620000-125629800 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr4:125620000-125631400 Weak transcription Brain Anterior Caudate brain
28 chr4:125620400-125630200 Weak transcription Adipose Nuclei Adipose
29 chr4:125620600-125629600 Weak transcription NHLF lung
30 chr4:125621000-125629800 Weak transcription Stomach Smooth Muscle stomach
31 chr4:125621400-125628400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr4:125622200-125629400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr4:125622200-125629600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr4:125622200-125629800 Weak transcription Psoas Muscle Psoas
35 chr4:125622200-125630400 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr4:125622400-125628200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
37 chr4:125622400-125629400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr4:125622400-125629600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr4:125622400-125629800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr4:125622400-125630200 Weak transcription Fetal Intestine Small intestine
41 chr4:125622400-125630400 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr4:125622400-125630400 Weak transcription Fetal Intestine Large intestine
43 chr4:125622400-125631000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr4:125622400-125632600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr4:125622600-125629800 Weak transcription iPS-18 Cell Line embryonic stem cell
46 chr4:125622600-125630200 Weak transcription A549 lung
47 chr4:125622800-125629600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr4:125622800-125629600 Weak transcription HMEC breast
49 chr4:125622800-125630200 Weak transcription Osteobl bone
50 chr4:125623000-125629400 Weak transcription Fetal Stomach stomach

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Last update: Aug 31, 2015