Variant report

Variant	rs28624988
Chromosome Location	chr5:116923069-116923070
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11959151	1.00[EUR][1000 genomes]
rs11960864	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11960865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4518442	1.00[EUR][1000 genomes]
rs57750926	1.00[EUR][1000 genomes]
rs61048997	1.00[EUR][1000 genomes]
rs73269006	1.00[EUR][1000 genomes]
rs73270969	1.00[EUR][1000 genomes]
rs73784615	1.00[EUR][1000 genomes]
rs73784635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784638	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786924	1.00[EUR][1000 genomes]
rs7732336	1.00[EUR][1000 genomes]
rs9764287	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830458	chr5:116831747-117003041	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116922200-116924000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:116922800-116923200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:116922800-116923400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:116922800-116923400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:116923000-116923800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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