Variant report

Variant	rs28626278
Chromosome Location	chr4:47473622-47473623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10001129	0.90[AFR][1000 genomes]
rs10013941	0.95[AFR][1000 genomes]
rs28437730	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28437900	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28564999	0.84[AFR][1000 genomes]
rs28664264	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47466000-47475400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:47467800-47474000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr4:47471200-47487000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:47473200-47475800	Enhancers	HepG2	liver
5	chr4:47473400-47473800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:47473400-47473800	Weak transcription	Placenta	Placenta
7	chr4:47473600-47473800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:47473600-47474000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr4:47473600-47474000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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