Variant report
| Variant | rs28627103 |
|---|---|
| Chromosome Location | chr14:106209522-106209523 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:12)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:12 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr14:106208935-106211212 | GM12892 | blood: | n/a | n/a |
| 2 | POLR2A | chr14:106207730-106209995 | GM12878 | blood: | n/a | n/a |
| 3 | POLR2A | chr14:106207896-106210065 | GM18526 | blood: | n/a | n/a |
| 4 | POLR2A | chr14:106208012-106209655 | GM18951 | blood: | n/a | n/a |
| 5 | POLR2A | chr14:106207414-106210091 | GM18505 | blood: | n/a | n/a |
| 6 | POLR2A | chr14:106209066-106211020 | GM12892 | blood: | n/a | n/a |
| 7 | POLR2A | chr14:106207433-106210080 | GM19099 | blood: | n/a | n/a |
| 8 | POLR2A | chr14:106204374-106209879 | GM12878 | blood: | n/a | n/a |
| 9 | POLR2A | chr14:106206098-106212496 | GM12892 | blood: | n/a | n/a |
| 10 | POLR2A | chr14:106207890-106209534 | GM15510 | blood: | n/a | n/a |
| 11 | POLR2A | chr14:106206198-106212474 | GM12892 | blood: | n/a | n/a |
| 12 | POLR2A | chr14:106208917-106209596 | GM12878 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| IGHG1 | TF binding region |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10130064 | 1.00[EUR][1000 genomes] |
| rs10140012 | 1.00[EUR][1000 genomes] |
| rs10147883 | 1.00[EUR][1000 genomes] |
| rs11552998 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11623609 | 1.00[EUR][1000 genomes] |
| rs11845835 | 1.00[EUR][1000 genomes] |
| rs11848125 | 1.00[EUR][1000 genomes] |
| rs11851505 | 1.00[EUR][1000 genomes] |
| rs12431652 | 1.00[EUR][1000 genomes] |
| rs12431653 | 1.00[EUR][1000 genomes] |
| rs13000 | 1.00[EUR][1000 genomes] |
| rs2104053 | 1.00[EUR][1000 genomes] |
| rs2753508 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2753557 | 1.00[EUR][1000 genomes] |
| rs28379859 | 1.00[EUR][1000 genomes] |
| rs28490894 | 0.81[AFR][1000 genomes] |
| rs28578923 | 1.00[EUR][1000 genomes] |
| rs28581525 | 1.00[EUR][1000 genomes] |
| rs28582906 | 1.00[EUR][1000 genomes] |
| rs28719009 | 1.00[EUR][1000 genomes] |
| rs3923867 | 1.00[EUR][1000 genomes] |
| rs4983362 | 1.00[EUR][1000 genomes] |
| rs4983477 | 1.00[EUR][1000 genomes] |
| rs4983481 | 1.00[EUR][1000 genomes] |
| rs58503622 | 1.00[EUR][1000 genomes] |
| rs60701849 | 1.00[EUR][1000 genomes] |
| rs61986371 | 1.00[EUR][1000 genomes] |
| rs6576114 | 1.00[EUR][1000 genomes] |
| rs6576119 | 1.00[EUR][1000 genomes] |
| rs6576121 | 1.00[EUR][1000 genomes] |
| rs7143643 | 1.00[EUR][1000 genomes] |
| rs7151762 | 1.00[EUR][1000 genomes] |
| rs7494106 | 1.00[EUR][1000 genomes] |
| rs9671515 | 1.00[EUR][1000 genomes] |
| rs9671964 | 1.00[EUR][1000 genomes] |
| rs9672055 | 1.00[EUR][1000 genomes] |
| rs9672072 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530813 | chr14:105607701-106453697 | Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 149 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:106204200-106211800 | Weak transcription | Placenta | Placenta |
| 2 | chr14:106205800-106214000 | Weak transcription | Spleen | Spleen |
| 3 | chr14:106209400-106210000 | Enhancers | Liver | Liver |
| 4 | chr14:106209400-106210600 | Weak transcription | Primary B cells from peripheral blood | blood |
