Variant report

Variant	rs28633937
Chromosome Location	chr18:30846186-30846187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11081796	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12150734	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12150736	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12150837	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1391025	0.85[ASN][1000 genomes]
rs16964459	0.85[ASN][1000 genomes]
rs271531	0.82[ASN][1000 genomes]
rs271532	0.82[ASN][1000 genomes]
rs271537	0.82[ASN][1000 genomes]
rs271538	0.82[ASN][1000 genomes]
rs271539	0.82[ASN][1000 genomes]
rs271540	0.82[ASN][1000 genomes]
rs28368446	0.84[ASN][1000 genomes]
rs28374541	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28375135	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394340	0.85[ASN][1000 genomes]
rs28457646	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521216	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4319841	0.97[ASN][1000 genomes]
rs4383225	0.85[ASN][1000 genomes]
rs4405623	0.85[ASN][1000 genomes]
rs4432316	0.85[ASN][1000 genomes]
rs4455039	0.85[ASN][1000 genomes]
rs4494628	0.85[ASN][1000 genomes]
rs4505412	0.96[ASN][1000 genomes]
rs4573999	0.85[ASN][1000 genomes]
rs4600534	0.85[ASN][1000 genomes]
rs4630625	0.98[ASN][1000 genomes]
rs4632197	0.85[ASN][1000 genomes]
rs4633796	0.85[ASN][1000 genomes]
rs466881	0.82[ASN][1000 genomes]
rs56168034	0.86[ASN][1000 genomes]
rs56675518	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56959895	0.85[ASN][1000 genomes]
rs57082165	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57204429	0.86[ASN][1000 genomes]
rs57358360	0.85[ASN][1000 genomes]
rs58448816	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59342170	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66481582	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66560059	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66714151	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67134528	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67274971	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67373469	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67560478	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67772507	0.86[ASN][1000 genomes]
rs67783924	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67881407	0.86[ASN][1000 genomes]
rs68068381	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68190773	0.86[ASN][1000 genomes]
rs72947170	0.82[ASN][1000 genomes]
rs72947172	0.84[ASN][1000 genomes]
rs72947174	0.84[ASN][1000 genomes]
rs72948837	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72948842	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72949130	0.86[ASN][1000 genomes]
rs72951055	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951085	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7351024	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7351029	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9951961	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9952144	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9953737	0.86[ASN][1000 genomes]
rs9962637	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9962832	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9962884	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2753661	chr18:30769502-30854602	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30844800-30849000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:30845000-30848800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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