Variant report

Variant	rs28637039
Chromosome Location	chr8:130285618-130285619
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10088168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10088545	0.86[AFR][1000 genomes]
rs10093139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094829	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105749	0.86[AFR][1000 genomes]
rs10111678	1.00[AMR][1000 genomes]
rs16904063	1.00[AMR][1000 genomes]
rs28402714	1.00[AMR][1000 genomes]
rs28407009	1.00[AMR][1000 genomes]
rs28408972	1.00[AMR][1000 genomes]
rs28459879	1.00[AMR][1000 genomes]
rs28462094	1.00[AMR][1000 genomes]
rs28485605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28493748	1.00[AMR][1000 genomes]
rs28515874	1.00[AMR][1000 genomes]
rs28534900	1.00[AMR][1000 genomes]
rs28613417	1.00[AMR][1000 genomes]
rs28717384	1.00[AMR][1000 genomes]
rs28809896	1.00[AMR][1000 genomes]
rs28847054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73390066	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130278800-130290600	Weak transcription	K562	blood
2	chr8:130280200-130288800	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:130281400-130286800	Enhancers	HMEC	breast
4	chr8:130282200-130287000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:130283200-130287200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:130283600-130286000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:130284200-130285800	Enhancers	Osteobl	bone
8	chr8:130284600-130285800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr8:130284600-130286800	Enhancers	NHDF-Ad	bronchial
10	chr8:130284800-130285800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:130284800-130285800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:130284800-130286400	Enhancers	HSMMtube	muscle
13	chr8:130284800-130286600	Enhancers	HSMM	muscle
14	chr8:130284800-130286800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:130285000-130286600	Enhancers	Adipose Nuclei	Adipose
16	chr8:130285200-130286600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:130285400-130285800	Enhancers	NHLF	lung
18	chr8:130285400-130286800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:130285600-130287000	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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