Variant report

Variant	rs28638172
Chromosome Location	chr6:150630513-150630514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59245770	0.85[EUR][1000 genomes]
rs6904151	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73614071	0.84[EUR][1000 genomes]
rs73614073	0.85[EUR][1000 genomes]
rs946417	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv524641	chr6:150625572-150644030	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150619600-150641200	Weak transcription	Right Atrium	heart
2	chr6:150621600-150635400	Weak transcription	Fetal Heart	heart
3	chr6:150624400-150634400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:150628800-150636000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:150629200-150633600	Weak transcription	K562	blood
6	chr6:150630000-150633800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:150630400-150630600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
8	chr6:150630400-150631800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:150630400-150634000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr6:150630400-150635000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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