Variant report

Variant	rs28641910
Chromosome Location	chr4:87824772-87824773
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10011798	1.00[ASN][1000 genomes]
rs10015121	1.00[ASN][1000 genomes]
rs10015477	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021020	0.94[ASN][1000 genomes]
rs10021790	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10034336	0.98[ASN][1000 genomes]
rs1010902	0.97[ASN][1000 genomes]
rs1010903	0.97[ASN][1000 genomes]
rs13115795	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13120981	0.94[ASN][1000 genomes]
rs13137483	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17012132	0.86[ASN][1000 genomes]
rs1985944	0.97[ASN][1000 genomes]
rs2121871	0.94[ASN][1000 genomes]
rs28446826	0.99[ASN][1000 genomes]
rs28650493	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28716151	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35428486	0.93[ASN][1000 genomes]
rs55698195	0.88[ASN][1000 genomes]
rs56201068	0.92[ASN][1000 genomes]
rs6823051	0.97[ASN][1000 genomes]
rs6846822	1.00[ASN][1000 genomes]
rs72667703	0.97[ASN][1000 genomes]
rs72667705	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87814000-87825000	Weak transcription	Right Atrium	heart
2	chr4:87814000-87825200	Weak transcription	Left Ventricle	heart
3	chr4:87814200-87824800	Weak transcription	Adipose Nuclei	Adipose
4	chr4:87814200-87825000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:87814200-87825200	Weak transcription	Right Ventricle	heart
6	chr4:87814200-87825200	Weak transcription	A549	lung
7	chr4:87814200-87829400	Weak transcription	K562	blood
8	chr4:87814400-87825000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:87814400-87825200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:87814400-87825200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:87814600-87825200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:87814600-87830000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:87816200-87825000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:87822000-87825000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:87822000-87825000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:87822000-87825200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:87822200-87825000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:87822200-87825000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr4:87822400-87825000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr4:87822400-87829800	Weak transcription	Placenta	Placenta
21	chr4:87823600-87825000	Weak transcription	Fetal Intestine Small	intestine

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