Variant report

Variant	rs28645598
Chromosome Location	chr7:103770025-103770026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103769885..103772805-chr7:103778154..103780939,3	K562	blood:
2	chr7:103769811..103772030-chr7:103775156..103777907,2	K562	blood:
3	chr7:103761712..103763276-chr7:103769878..103771926,2	K562	blood:
4	chr7:103215795..103218619-chr7:103769174..103771262,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1019312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10234499	1.00[EUR][1000 genomes]
rs10235130	1.00[EUR][1000 genomes]
rs10235201	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10241191	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242752	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10249033	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250235	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251308	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251561	1.00[EUR][1000 genomes]
rs10251976	0.82[AFR][1000 genomes]
rs10255806	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256764	1.00[EUR][1000 genomes]
rs10258773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10260238	0.85[AFR][1000 genomes]
rs10262560	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262796	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262996	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263828	1.00[EUR][1000 genomes]
rs10266337	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267412	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267940	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270562	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271923	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10275484	1.00[EUR][1000 genomes]
rs10276243	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10278320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10281709	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10282300	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487184	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487192	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11489610	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11972422	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979390	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979993	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11980018	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12112576	1.00[EUR][1000 genomes]
rs16873387	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158586	1.00[EUR][1000 genomes]
rs17159290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159774	1.00[EUR][1000 genomes]
rs2307409	1.00[EUR][1000 genomes]
rs2385134	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28481813	1.00[EUR][1000 genomes]
rs28644319	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28686914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28702500	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28773535	1.00[EUR][1000 genomes]
rs28820003	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58842751	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59750244	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6948021	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6949887	0.85[AFR][1000 genomes]
rs6954109	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962621	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6967711	1.00[EUR][1000 genomes]
rs6975642	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413894	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415704	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73415717	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73415730	1.00[EUR][1000 genomes]
rs73415786	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415801	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417705	1.00[EUR][1000 genomes]
rs73417718	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777446	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777906	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7810496	1.00[EUR][1000 genomes]
rs9655777	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9656090	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103761400-103771000	Weak transcription	Fetal Lung	lung
2	chr7:103761400-103778600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:103762800-103774200	Weak transcription	HepG2	liver
4	chr7:103763000-103777600	Weak transcription	Fetal Intestine Small	intestine
5	chr7:103763400-103773000	Weak transcription	Fetal Heart	heart
6	chr7:103763400-103774200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:103763400-103779400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:103763600-103770800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:103763600-103776200	Weak transcription	Colonic Mucosa	Colon
10	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:103764000-103783200	Weak transcription	NHLF	lung
12	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:103764400-103772400	Weak transcription	Fetal Intestine Large	intestine
14	chr7:103764400-103776200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:103764400-103776400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:103764400-103776400	Weak transcription	NH-A	brain
17	chr7:103764400-103777800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:103764400-103778400	Weak transcription	NHDF-Ad	bronchial
19	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr7:103764600-103771200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:103764600-103771200	Weak transcription	HUVEC	blood vessel
22	chr7:103764600-103772800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:103765000-103774600	Strong transcription	Primary B cells from cord blood	blood
24	chr7:103765400-103778000	Weak transcription	Stomach Mucosa	stomach
25	chr7:103765600-103770800	Weak transcription	Osteobl	bone
26	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
27	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
28	chr7:103765800-103770800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr7:103765800-103770800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:103765800-103776400	Weak transcription	Fetal Brain Female	brain
31	chr7:103766000-103770600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:103766000-103770800	Weak transcription	Thymus	Thymus
33	chr7:103766000-103770800	Weak transcription	HSMMtube	muscle
34	chr7:103766000-103771000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr7:103766000-103774400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:103766000-103776200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr7:103766000-103778000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr7:103766200-103770600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:103766200-103770600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:103766200-103770800	Weak transcription	Aorta	Aorta
41	chr7:103766200-103770800	Weak transcription	Ovary	ovary
42	chr7:103766200-103771000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr7:103766200-103774000	Weak transcription	Lung	lung
44	chr7:103766200-103779000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr7:103766200-103779000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:103766200-103800000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
48	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
49	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
50	chr7:103766200-103838400	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links