Variant report

Variant	rs28654948
Chromosome Location	chr7:126324827-126324828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10229382	0.97[AFR][1000 genomes]
rs10244102	0.89[AFR][1000 genomes]
rs10244659	0.97[AFR][1000 genomes]
rs10247812	0.97[AFR][1000 genomes]
rs10253111	0.97[AFR][1000 genomes]
rs10254454	0.97[AFR][1000 genomes]
rs10258741	1.00[AFR][1000 genomes]
rs10267217	0.87[AFR][1000 genomes]
rs10272830	1.00[AFR][1000 genomes]
rs10273625	0.97[AFR][1000 genomes]
rs17150142	1.00[AMR][1000 genomes]
rs1815973	0.82[AFR][1000 genomes]
rs28452678	0.97[AFR][1000 genomes]
rs73449037	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126321800-126325000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:126321800-126328800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:126323600-126328600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:126324400-126325200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:126324800-126326800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links