Variant report

Variant	rs28655441
Chromosome Location	chr11:57259783-57259784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57258981..57259832-chr11:57294341..57295266,3	K562	blood:
2	chr11:57253056..57260530-chr11:57277596..57285007,11	K562	blood:
3	chr11:57192415..57195414-chr11:57258192..57260689,2	K562	blood:
4	chr11:57254555..57260449-chr11:57262001..57269915,7	K562	blood:
5	chr11:57259488..57262312-chr11:57297158..57299801,2	K562	blood:

Variant related genes	Relation type
ENSG00000134809	Chromatin interaction
ENSG00000251995	Chromatin interaction
ENSG00000134802	Chromatin interaction
ENSG00000149150	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	esv3359382	chr11:57258801-57261349	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57250800-57266000	Weak transcription	Right Atrium	heart
2	chr11:57251000-57260600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:57251000-57261400	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:57251000-57266800	Weak transcription	HUVEC	blood vessel
5	chr11:57251000-57267400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:57251200-57260800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:57251200-57260800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:57251200-57261000	Weak transcription	Brain Angular Gyrus	brain
9	chr11:57251200-57261000	Weak transcription	Dnd41	blood
10	chr11:57251200-57263800	Strong transcription	Ovary	ovary
11	chr11:57251200-57266800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:57251200-57266800	Weak transcription	HSMM	muscle
13	chr11:57251200-57280600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:57251400-57261200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:57251400-57266000	Weak transcription	Brain Substantia Nigra	brain
16	chr11:57251400-57266200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:57251400-57266400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:57251400-57266800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:57251400-57279200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr11:57251400-57281200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:57251600-57259800	Strong transcription	Stomach Smooth Muscle	stomach
22	chr11:57251600-57260800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:57251600-57266800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:57251800-57266200	Strong transcription	Fetal Stomach	stomach
25	chr11:57252000-57260800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:57252200-57261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:57252200-57261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:57252400-57264000	Weak transcription	Stomach Mucosa	stomach
29	chr11:57252600-57267600	Weak transcription	Small Intestine	intestine
30	chr11:57252800-57266800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:57253200-57266800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr11:57253200-57266800	Weak transcription	Thymus	Thymus
33	chr11:57253400-57263200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:57253400-57266800	Weak transcription	Fetal Thymus	thymus
35	chr11:57253800-57261400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:57253800-57266800	Weak transcription	Colonic Mucosa	Colon
37	chr11:57253800-57266800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:57253800-57266800	Weak transcription	Osteobl	bone
39	chr11:57253800-57276400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:57253800-57279000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr11:57255200-57266800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:57255200-57269600	Weak transcription	Esophagus	oesophagus
43	chr11:57255800-57261400	Weak transcription	Psoas Muscle	Psoas
44	chr11:57256000-57266800	Weak transcription	HSMMtube	muscle
45	chr11:57256400-57273000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:57256800-57261200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:57256800-57266800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr11:57257000-57260200	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr11:57257000-57267800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:57257200-57266600	Weak transcription	Rectal Mucosa Donor 31	rectum

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