Variant report
Variant | rs28659858 |
---|---|
Chromosome Location | chr9:15527349-15527350 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:8)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:8 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | POLR2A | chr9:15527211-15527975 | H1-hESC | embryonic stem cell: | n/a | n/a |
2 | USF2 | chr9:15527063-15527376 | HepG2 | liver: | n/a | chr9:15527220-15527231 |
3 | POLR2A | chr9:15527330-15528041 | GM12892 | blood: | n/a | n/a |
4 | POLR2A | chr9:15527326-15528011 | GM12878 | blood: | n/a | n/a |
5 | PAX5 | chr9:15527309-15527754 | GM12878 | blood: | n/a | n/a |
6 | CEBPB | chr9:15527034-15527402 | K562 | blood: | n/a | n/a |
7 | ZBTB33 | chr9:15527306-15527859 | K562 | blood: | n/a | n/a |
8 | USF1 | chr9:15527038-15527366 | K562 | blood: | n/a | chr9:15527220-15527231 |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
RN7SL98P | TF binding region |
rs_ID | r2[population] |
---|---|
rs10121012 | 0.91[AMR][1000 genomes] |
rs10125713 | 0.84[AMR][1000 genomes] |
rs12336383 | 1.00[AMR][1000 genomes] |
rs12336445 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs12337310 | 0.84[AMR][1000 genomes] |
rs12344963 | 0.84[AMR][1000 genomes] |
rs12350062 | 0.84[AMR][1000 genomes] |
rs12350903 | 0.91[AMR][1000 genomes] |
rs12352398 | 0.84[AMR][1000 genomes] |
rs12859 | 0.84[AMR][1000 genomes] |
rs2064030 | 0.84[AMR][1000 genomes] |
rs2221706 | 0.82[AMR][1000 genomes] |
rs2665515 | 0.84[AMR][1000 genomes] |
rs2737840 | 0.84[AMR][1000 genomes] |
rs276437 | 0.82[AMR][1000 genomes] |
rs276438 | 0.84[AMR][1000 genomes] |
rs276439 | 0.91[AMR][1000 genomes] |
rs276445 | 0.91[AMR][1000 genomes] |
rs276446 | 0.91[AMR][1000 genomes] |
rs276450 | 0.91[AMR][1000 genomes] |
rs276451 | 0.91[AMR][1000 genomes] |
rs2777951 | 0.84[AMR][1000 genomes] |
rs2795125 | 0.84[AMR][1000 genomes] |
rs2795127 | 0.82[AMR][1000 genomes] |
rs2821525 | 0.84[AMR][1000 genomes] |
rs2821530 | 0.84[AMR][1000 genomes] |
rs2821542 | 0.84[AMR][1000 genomes] |
rs2821543 | 0.91[AMR][1000 genomes] |
rs2821544 | 0.91[AMR][1000 genomes] |
rs28735068 | 1.00[ASN][1000 genomes] |
rs28796681 | 0.91[AMR][1000 genomes] |
rs28800775 | 0.91[AMR][1000 genomes] |
rs28805077 | 0.84[AMR][1000 genomes] |
rs28893033 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs3119700 | 0.91[AMR][1000 genomes] |
rs3122701 | 0.82[AMR][1000 genomes] |
rs3122705 | 0.91[AMR][1000 genomes] |
rs3129711 | 0.91[AMR][1000 genomes] |
rs365710 | 0.91[AMR][1000 genomes] |
rs381205 | 0.84[AMR][1000 genomes] |
rs392627 | 1.00[AMR][1000 genomes] |
rs413356 | 0.91[AMR][1000 genomes] |
rs415157 | 0.84[AMR][1000 genomes] |
rs418153 | 0.91[AMR][1000 genomes] |
rs4237140 | 0.82[AMR][1000 genomes] |
rs424131 | 0.82[AMR][1000 genomes] |
rs592452 | 0.84[AMR][1000 genomes] |
rs741930 | 0.84[AMR][1000 genomes] |
rs7852936 | 0.84[AMR][1000 genomes] |
rs796391 | 0.91[AMR][1000 genomes] |
rs811282 | 0.84[AMR][1000 genomes] |
rs926154 | 0.84[AMR][1000 genomes] |
rs9298729 | 0.84[AMR][1000 genomes] |
rs9406518 | 0.91[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv517975 | chr9:15286446-15534070 | Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
2 | nsv892625 | chr9:15326251-16064850 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
3 | nsv892626 | chr9:15389610-15694690 | Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
4 | nsv892627 | chr9:15397969-15909450 | Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
5 | nsv892628 | chr9:15420805-15528290 | Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
6 | nsv892629 | chr9:15516375-15634326 | Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
7 | nsv968597 | chr9:15522707-15527787 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:15523000-15528200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |