Variant report

Variant	rs28661609
Chromosome Location	chr14:67938988-67938989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr14:67938814-67939412	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:67937786..67940325-chr14:67940798..67942852,2	MCF-7	breast:
2	chr14:67928466..67932816-chr14:67938653..67942762,5	MCF-7	breast:
3	chr14:67938787..67940976-chr14:67998285..68000377,3	MCF-7	breast:

Variant related genes	Relation type
TMEM229B	TF binding region
ENSG00000054690	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10139090	0.92[AFR][1000 genomes]
rs28558685	0.94[AFR][1000 genomes]
rs3742865	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1048046	chr14:67932876-67958467	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv902067	chr14:67935206-67953848	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1035855	chr14:67935684-67964355	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1320	chr14:67938724-67984157	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67928800-67946600	Weak transcription	Pancreas	Pancrea
2	chr14:67929600-67942600	Weak transcription	Lung	lung
3	chr14:67931200-67939600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:67931400-67939000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:67932000-67939600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr14:67932800-67939200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:67932800-67940000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:67933000-67954400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:67933200-67939400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:67934400-67939400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:67934600-67939000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr14:67934600-67950600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:67934800-67939200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr14:67934800-67946800	Weak transcription	Placenta	Placenta
15	chr14:67935000-67977200	Weak transcription	Brain Angular Gyrus	brain
16	chr14:67935200-67946800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr14:67935200-67952200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr14:67935400-67940200	Weak transcription	Fetal Intestine Large	intestine
19	chr14:67935400-67945200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr14:67936000-67939600	Weak transcription	Fetal Thymus	thymus
21	chr14:67936000-67952000	Weak transcription	Brain Substantia Nigra	brain
22	chr14:67937000-67939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:67937400-67939000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr14:67937400-67944800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr14:67937400-67945000	Weak transcription	Colonic Mucosa	Colon
26	chr14:67937400-67945200	Strong transcription	Fetal Intestine Small	intestine
27	chr14:67937400-67951600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr14:67937400-67954800	Weak transcription	Gastric	stomach
29	chr14:67937400-67955000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr14:67937600-67940600	Strong transcription	Spleen	Spleen
31	chr14:67937600-67952000	Strong transcription	Primary T cells from cord blood	blood
32	chr14:67937600-67955000	Weak transcription	Brain Anterior Caudate	brain
33	chr14:67937800-67939400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr14:67938000-67945600	Weak transcription	Adipose Nuclei	Adipose
35	chr14:67938200-67939600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:67938200-67940800	Strong transcription	Thymus	Thymus
37	chr14:67938200-67953400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr14:67938400-67945000	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr14:67938400-67951800	Weak transcription	Fetal Brain Female	brain
40	chr14:67938600-67939800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:67938600-67940600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:67938600-67940800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr14:67938600-67940800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr14:67938600-67944600	Strong transcription	Duodenum Mucosa	Duodenum
45	chr14:67938800-67939000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr14:67938800-67947000	Strong transcription	Primary T helper cells fromperipheralblood	blood

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