Variant report

Variant	rs28661610
Chromosome Location	chr15:78985317-78985318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11072787	0.81[EUR][1000 genomes]
rs1114829	0.89[EUR][1000 genomes]
rs2869552	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62010552	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62010554	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6495317	0.86[EUR][1000 genomes]
rs6495318	0.89[EUR][1000 genomes]
rs7163236	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7170552	0.89[EUR][1000 genomes]
rs7170563	0.86[EUR][1000 genomes]
rs72625802	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8032552	0.81[EUR][1000 genomes]
rs8039600	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8043123	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv974713	chr15:78945824-78996783	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv457209	chr15:78949127-78986805	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv471256	chr15:78949127-78986805	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv570203	chr15:78949127-78986805	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78978600-78985400	Weak transcription	Fetal Brain Female	brain
2	chr15:78979000-78988400	Weak transcription	Left Ventricle	heart
3	chr15:78983600-78988800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:78984000-78988200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:78984600-78986600	Weak transcription	Spleen	Spleen
6	chr15:78984600-78988200	Weak transcription	Esophagus	oesophagus
7	chr15:78984800-78988200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:78985000-78985600	Enhancers	Thymus	Thymus
9	chr15:78985000-78985800	Enhancers	Fetal Thymus	thymus
10	chr15:78985200-78985800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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