Variant report

Variant	rs28669095
Chromosome Location	chr8:130163275-130163276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10088545	1.00[AMR][1000 genomes]
rs10095183	1.00[AFR][1000 genomes]
rs10105749	1.00[AMR][1000 genomes]
rs10111192	1.00[AFR][1000 genomes]
rs28613417	1.00[AFR][1000 genomes]
rs28641811	1.00[AFR][1000 genomes]
rs28651530	1.00[AFR][1000 genomes]
rs4345519	1.00[AFR][1000 genomes]
rs55816406	1.00[AMR][1000 genomes]
rs73708278	1.00[AMR][1000 genomes]
rs73708281	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891445	chr8:130152109-130224721	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130159800-130164200	Genic enhancers	Dnd41	blood
2	chr8:130161000-130174400	Weak transcription	Fetal Thymus	thymus
3	chr8:130162800-130163600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:130163000-130163400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:130163200-130163400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:130163200-130163400	Enhancers	Fetal Muscle Leg	muscle
7	chr8:130163200-130163600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:130163200-130163600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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