Variant report

Variant	rs28669153
Chromosome Location	chr11:47621309-47621310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47572841..47575081-chr11:47619701..47622604,2	MCF-7	breast:
2	chr11:47599935..47602046-chr11:47621063..47622669,2	K562	blood:
3	chr11:47598474..47602046-chr11:47618887..47622669,5	K562	blood:
4	chr11:47620964..47622605-chr11:47627405..47629892,2	MCF-7	breast:
5	chr11:47619408..47621652-chr11:47621906..47625534,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123444	Chromatin interaction
ENSG00000213619	Chromatin interaction
ENSG00000231880	Chromatin interaction
ENSG00000149187	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10769257	1.00[AMR][1000 genomes]
rs11039301	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039310	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270340	1.00[AMR][1000 genomes]
rs12273492	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280205	1.00[AMR][1000 genomes]
rs12293210	1.00[AMR][1000 genomes]
rs12294436	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47607000-47632800	Weak transcription	Dnd41	blood
2	chr11:47616000-47628200	Weak transcription	Right Atrium	heart
3	chr11:47616400-47627000	Weak transcription	Pancreas	Pancrea
4	chr11:47616400-47628200	Weak transcription	HSMMtube	muscle
5	chr11:47616400-47628400	Weak transcription	Ovary	ovary
6	chr11:47616600-47631400	Weak transcription	Spleen	Spleen
7	chr11:47616600-47632400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:47616600-47632600	Weak transcription	Brain Substantia Nigra	brain
9	chr11:47616800-47624000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:47617400-47628200	Weak transcription	Right Ventricle	heart
11	chr11:47617600-47643200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:47617800-47632400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:47618000-47628200	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:47618000-47639200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:47618400-47628200	Weak transcription	Fetal Intestine Small	intestine
16	chr11:47618400-47628600	Weak transcription	Liver	Liver
17	chr11:47619200-47627000	Weak transcription	Primary T cells from cord blood	blood
18	chr11:47619400-47631400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:47619600-47631400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:47619600-47631600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:47620000-47621600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:47620600-47621400	Enhancers	K562	blood
23	chr11:47620600-47621800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:47620600-47628200	Weak transcription	Thymus	Thymus
25	chr11:47620800-47621600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr11:47620800-47621600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr11:47620800-47621800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr11:47620800-47621800	Enhancers	Brain Anterior Caudate	brain
29	chr11:47620800-47622000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:47620800-47637800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:47621000-47621400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:47621000-47621800	Enhancers	NHDF-Ad	bronchial
33	chr11:47621000-47622000	Enhancers	Adipose Nuclei	Adipose
34	chr11:47621000-47640400	Weak transcription	Fetal Brain Female	brain
35	chr11:47621200-47621400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:47621200-47621400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
37	chr11:47621200-47621400	Active TSS	Stomach Smooth Muscle	stomach
38	chr11:47621200-47621600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:47621200-47621600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:47621200-47621600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr11:47621200-47621800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:47621200-47621800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr11:47621200-47622000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:47621200-47622000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:47621200-47628800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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