Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1078607	0.80[EUR][1000 genomes]
rs1883375	0.85[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1883380	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2076247	0.91[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs2143004	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2425469	0.89[ASN][1000 genomes]
rs2425470	0.95[ASN][1000 genomes]
rs2425471	0.95[ASN][1000 genomes]
rs2425472	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs2425473	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2425475	0.91[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs2866947	0.95[ASN][1000 genomes]
rs3091600	0.89[ASN][1000 genomes]
rs3091875	0.85[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs3091889	0.95[ASN][1000 genomes]
rs3091932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3092252	0.95[ASN][1000 genomes]
rs3092503	0.95[ASN][1000 genomes]
rs3092588	0.95[ASN][1000 genomes]
rs3092614	0.95[ASN][1000 genomes]
rs6124415	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6130027	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7263976	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3381	chr20:39925326-40765696	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv995175	chr20:40699252-40707470	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40697000-40703400	Weak transcription	Fetal Lung	lung
2	chr20:40697200-40705800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr20:40699000-40702800	Weak transcription	Fetal Stomach	stomach
4	chr20:40699400-40701800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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