Variant report

Variant	rs28670348
Chromosome Location	chr4:143625388-143625389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143535588..143538325-chr4:143625041..143627552,2	MCF-7	breast:
2	chr4:143394445..143397075-chr4:143623898..143626270,2	MCF-7	breast:
3	chr4:143620976..143623846-chr4:143624142..143626240,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13140375	1.00[ASN][1000 genomes]
rs62331902	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143616000-143628800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr4:143616800-143629600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr4:143617800-143626400	Weak transcription	Psoas Muscle	Psoas
4	chr4:143620800-143642000	Weak transcription	Fetal Heart	heart
5	chr4:143621800-143626200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr4:143622200-143628000	Enhancers	Primary T cells from cord blood	blood
7	chr4:143622200-143629200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:143622600-143628600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr4:143624200-143626600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr4:143624400-143626400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:143624400-143627200	Enhancers	Fetal Thymus	thymus
12	chr4:143624400-143629400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr4:143624600-143625600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:143624800-143625400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr4:143624800-143625400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:143624800-143625400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:143624800-143625400	Flanking Active TSS	Thymus	Thymus
18	chr4:143624800-143625400	Enhancers	HMEC	breast
19	chr4:143624800-143628000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr4:143625000-143625400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:143625000-143625400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:143625200-143625600	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr4:143625200-143625600	Enhancers	Dnd41	blood
24	chr4:143625200-143626000	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr4:143625200-143627200	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr4:143625200-143629600	Weak transcription	Aorta	Aorta
27	chr4:143625200-143641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links