Variant report

Variant	rs28670878
Chromosome Location	chr8:10922478-10922479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10096824	0.90[ASN][1000 genomes]
rs11994349	0.90[ASN][1000 genomes]
rs11997437	0.90[ASN][1000 genomes]
rs28368616	0.90[ASN][1000 genomes]
rs28510785	0.90[ASN][1000 genomes]
rs28636902	0.90[ASN][1000 genomes]
rs28654412	0.90[ASN][1000 genomes]
rs28658128	0.90[ASN][1000 genomes]
rs60363768	0.90[ASN][1000 genomes]
rs7357362	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10917000-10926000	Weak transcription	Gastric	stomach
2	chr8:10917400-10923400	Weak transcription	Psoas Muscle	Psoas
3	chr8:10917400-10923400	Weak transcription	Right Atrium	heart
4	chr8:10917600-10923600	Weak transcription	Brain Angular Gyrus	brain
5	chr8:10917800-10924400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:10918000-10925000	Weak transcription	Brain Anterior Caudate	brain
7	chr8:10918200-10924200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:10919600-10924200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:10919800-10923200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:10919800-10924000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr8:10920000-10923200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:10920000-10924400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:10920400-10923200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:10921000-10922600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:10921000-10924200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:10921400-10922800	Enhancers	HSMMtube	muscle
17	chr8:10921600-10923800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr8:10921600-10924200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr8:10921800-10922800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:10921800-10922800	Weak transcription	NH-A	brain
21	chr8:10921800-10924200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:10921800-10924400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:10921800-10924400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:10921800-10924400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr8:10922000-10922600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:10922000-10922800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:10922000-10923000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr8:10922000-10923200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr8:10922000-10923200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:10922000-10923200	Enhancers	HSMM	muscle
31	chr8:10922000-10923400	Weak transcription	Fetal Muscle Leg	muscle
32	chr8:10922000-10923800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr8:10922000-10929600	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr8:10922400-10922800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr8:10922400-10923200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr8:10922400-10923600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:10922400-10923800	Weak transcription	NHEK	skin
38	chr8:10922400-10924200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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