Variant report

Variant	rs28675865
Chromosome Location	chr7:137673806-137673807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137648208..137650009-chr7:137671387..137674273,2	MCF-7	breast:
2	chr7:137671547..137674449-chr7:137685496..137687217,2	K562	blood:
3	chr7:137670403..137672264-chr7:137672542..137674073,2	MCF-7	breast:
4	chr7:137618001..137620791-chr7:137673471..137675554,2	K562	blood:

Variant related genes	Relation type
ENSG00000182158	Chromatin interaction
ENSG00000122787	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10232506	1.00[AMR][1000 genomes]
rs10235317	1.00[AMR][1000 genomes]
rs10236609	1.00[AMR][1000 genomes]
rs10242671	1.00[AMR][1000 genomes]
rs10249301	1.00[AMR][1000 genomes]
rs10250005	1.00[AMR][1000 genomes]
rs10258577	1.00[AMR][1000 genomes]
rs10264216	1.00[AMR][1000 genomes]
rs10268709	1.00[AMR][1000 genomes]
rs10276142	1.00[AMR][1000 genomes]
rs10279427	1.00[AMR][1000 genomes]
rs13362852	1.00[AMR][1000 genomes]
rs28687061	1.00[AMR][1000 genomes]
rs28735498	1.00[AMR][1000 genomes]
rs28841352	1.00[AMR][1000 genomes]
rs73732228	1.00[AMR][1000 genomes]
rs73732229	1.00[AMR][1000 genomes]
rs7810602	1.00[AMR][1000 genomes]
rs9655904	1.00[AMR][1000 genomes]
rs9656503	1.00[AMR][1000 genomes]
rs9692029	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137651400-137675200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr7:137652800-137674400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:137652800-137674800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:137652800-137677600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:137654000-137674200	Weak transcription	NHEK	skin
6	chr7:137659200-137675200	Enhancers	Adipose Nuclei	Adipose
7	chr7:137661400-137679400	Enhancers	Placenta	Placenta
8	chr7:137663800-137674800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:137665000-137674400	Enhancers	Colon Smooth Muscle	Colon
10	chr7:137666800-137682800	Weak transcription	Hela-S3	cervix
11	chr7:137667200-137676800	Weak transcription	A549	lung
12	chr7:137667400-137675400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr7:137667600-137676000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr7:137667600-137679400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:137667800-137676000	Enhancers	Brain Cingulate Gyrus	brain
16	chr7:137667800-137676000	Enhancers	Brain Hippocampus Middle	brain
17	chr7:137667800-137676000	Enhancers	Fetal Lung	lung
18	chr7:137668000-137674600	Enhancers	Primary B cells from peripheral blood	blood
19	chr7:137668000-137675800	Enhancers	Aorta	Aorta
20	chr7:137668200-137674800	Enhancers	HUVEC	blood vessel
21	chr7:137668200-137675400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr7:137668400-137674400	Enhancers	Fetal Muscle Trunk	muscle
23	chr7:137668400-137675200	Enhancers	Ovary	ovary
24	chr7:137668600-137674800	Enhancers	Gastric	stomach
25	chr7:137669000-137677200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr7:137669400-137679600	Enhancers	Fetal Muscle Leg	muscle
27	chr7:137669800-137678200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr7:137670000-137676000	Enhancers	Duodenum Mucosa	Duodenum
29	chr7:137670400-137674400	Weak transcription	Esophagus	oesophagus
30	chr7:137670400-137674600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:137670400-137674600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr7:137670400-137677000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:137671000-137674400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr7:137671000-137674600	Enhancers	NH-A	brain
35	chr7:137671000-137675200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:137671000-137675600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:137671000-137675800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:137671200-137674200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:137671200-137675800	Enhancers	Brain Substantia Nigra	brain
40	chr7:137671400-137676200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr7:137671600-137674200	Enhancers	Rectal Smooth Muscle	rectum
42	chr7:137671600-137674400	Enhancers	K562	blood
43	chr7:137671600-137674600	Weak transcription	Fetal Kidney	kidney
44	chr7:137671600-137675000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr7:137671600-137675400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:137671600-137677000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr7:137671600-137677600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr7:137671800-137674400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr7:137671800-137674400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:137671800-137674400	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links