Variant report
| Variant | rs28690223 |
|---|---|
| Chromosome Location | chr4:147939578-147939579 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:147938835..147939664-chr4:148018151..148018826,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10011414 | 1.00[AFR][1000 genomes] |
| rs10029336 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10029415 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10032981 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13353682 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13434880 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17022344 | 1.00[AMR][1000 genomes] |
| rs28418624 | 1.00[AMR][1000 genomes] |
| rs28419085 | 1.00[AMR][1000 genomes] |
| rs28427468 | 1.00[AMR][1000 genomes] |
| rs28429124 | 1.00[AFR][1000 genomes] |
| rs28485213 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28489480 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28490972 | 1.00[AMR][1000 genomes] |
| rs28580106 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28657904 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28688131 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28698911 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853260 | 1.00[AMR][1000 genomes] |
| rs73853282 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853292 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73856341 | 1.00[AMR][1000 genomes] |
| rs73856355 | 1.00[AMR][1000 genomes] |
| rs73856360 | 1.00[AMR][1000 genomes] |
| rs73856361 | 1.00[AMR][1000 genomes] |
| rs9995564 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880240 | chr4:147905897-148032003 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv461676 | chr4:147927227-147962432 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv595652 | chr4:147927227-147962432 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1016598 | chr4:147931134-148012064 | Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:147936800-147940000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr4:147938800-147940000 | Weak transcription | Hela-S3 | cervix |
