Variant report

Variant	rs28691233
Chromosome Location	chr7:137916925-137916926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10232506	1.00[AMR][1000 genomes]
rs10235317	1.00[AMR][1000 genomes]
rs10242671	1.00[AMR][1000 genomes]
rs10249301	1.00[AMR][1000 genomes]
rs10250005	1.00[AMR][1000 genomes]
rs10258577	1.00[AMR][1000 genomes]
rs10264216	1.00[AMR][1000 genomes]
rs10266425	1.00[AMR][1000 genomes]
rs10266565	1.00[AMR][1000 genomes]
rs10268709	1.00[AMR][1000 genomes]
rs10276142	1.00[AMR][1000 genomes]
rs10281914	1.00[AMR][1000 genomes]
rs28650966	1.00[AMR][1000 genomes]
rs28687061	1.00[AMR][1000 genomes]
rs28735498	1.00[AMR][1000 genomes]
rs28841352	1.00[AMR][1000 genomes]
rs73732228	1.00[AMR][1000 genomes]
rs73732229	1.00[AMR][1000 genomes]
rs7810602	1.00[AMR][1000 genomes]
rs9656503	1.00[AMR][1000 genomes]
rs9692029	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137905800-137928600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:137912800-137917600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:137913000-137918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:137915000-137931800	Weak transcription	Right Atrium	heart
5	chr7:137916200-137917600	Enhancers	Liver	Liver
6	chr7:137916400-137917800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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