Variant report

Variant	rs28695531
Chromosome Location	chr7:147590972-147590973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10233606	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7797634	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3441359	chr7:147585772-147592059	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147589400-147592000	Enhancers	Brain Substantia Nigra	brain
2	chr7:147589600-147591600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:147590400-147591400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:147590600-147591600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:147590600-147591800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:147590600-147591800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:147590600-147592000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:147590800-147591600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:147590800-147591600	Enhancers	Brain Anterior Caudate	brain
10	chr7:147590800-147591600	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:147590800-147591600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr7:147590800-147591800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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