Variant report

Variant	rs2869571
Chromosome Location	chr15:79033018-79033019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11856441	0.86[ASN][1000 genomes]
rs12438758	0.86[ASN][1000 genomes]
rs12439049	0.84[ASN][1000 genomes]
rs12592744	0.81[ASN][1000 genomes]
rs1809415	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2291196	0.89[ASN][1000 genomes]
rs3861181	0.94[ASN][1000 genomes]
rs58717592	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59888683	0.92[ASN][1000 genomes]
rs59934757	0.92[ASN][1000 genomes]
rs62012588	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7178741	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79031800-79033800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:79032600-79033200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr15:79032600-79033200	Enhancers	K562	blood
4	chr15:79032600-79033400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:79032600-79033400	Enhancers	Gastric	stomach
6	chr15:79032600-79033600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:79032600-79034000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr15:79032800-79033400	Enhancers	Spleen	Spleen
9	chr15:79033000-79033200	Enhancers	Stomach Smooth Muscle	stomach
10	chr15:79033000-79033400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:79033000-79033400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr15:79033000-79045000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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