Variant report

Variant	rs28697000
Chromosome Location	chr3:119463466-119463467
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61744328	1.00[AMR][1000 genomes]
rs72554006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119423000-119464400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:119423200-119464200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:119423200-119471600	Weak transcription	Fetal Kidney	kidney
4	chr3:119428800-119469200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:119431200-119470400	Weak transcription	Gastric	stomach
6	chr3:119435400-119478200	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:119450600-119474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:119451000-119473400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:119451200-119465000	Weak transcription	Fetal Brain Female	brain
10	chr3:119451200-119475200	Weak transcription	Fetal Brain Male	brain
11	chr3:119455200-119470200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:119456200-119470600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:119457600-119472200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:119458400-119470000	Weak transcription	Aorta	Aorta
15	chr3:119458800-119471200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:119459400-119470000	Weak transcription	Brain Substantia Nigra	brain
17	chr3:119459600-119472200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:119460000-119464800	Weak transcription	Fetal Stomach	stomach
19	chr3:119460800-119470600	Weak transcription	Left Ventricle	heart
20	chr3:119462600-119463800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:119462800-119463600	Strong transcription	Pancreas	Pancrea
22	chr3:119462800-119464600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:119462800-119465000	Strong transcription	Ovary	ovary
24	chr3:119462800-119466600	Strong transcription	Brain Anterior Caudate	brain
25	chr3:119463000-119464000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:119463200-119476000	Weak transcription	Spleen	Spleen
27	chr3:119463400-119465600	Weak transcription	Brain Angular Gyrus	brain
28	chr3:119463400-119469400	Weak transcription	Brain Hippocampus Middle	brain

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