Variant report

Variant	rs28698923
Chromosome Location	chr14:65688338-65688339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65687978..65690881-chr14:65733392..65735746,2	MCF-7	breast:
2	chr14:65682951..65699539-chr14:65874873..65882779,51	MCF-7	breast:
3	chr14:65687538..65689210-chr14:65800729..65803430,2	MCF-7	breast:
4	chr14:65685682..65688470-chr14:65691307..65693933,2	MCF-7	breast:
5	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266740	Chromatin interaction
ENSG00000258613	Chromatin interaction
ENSG00000214759	Chromatin interaction
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10133129	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531694	0.90[ASN][1000 genomes]
rs2275011	0.95[ASN][1000 genomes]
rs2275012	0.95[ASN][1000 genomes]
rs28440787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28475743	0.91[ASN][1000 genomes]
rs28557069	0.95[ASN][1000 genomes]
rs28660318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59307701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60242721	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65672800-65691400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:65674000-65691400	Weak transcription	Thymus	Thymus
3	chr14:65678600-65690600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:65682000-65689200	Weak transcription	Right Atrium	heart
5	chr14:65683800-65688800	Weak transcription	Brain Angular Gyrus	brain
6	chr14:65683800-65688800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:65684000-65688400	Weak transcription	Brain Anterior Caudate	brain
8	chr14:65684200-65689000	Weak transcription	Brain Substantia Nigra	brain
9	chr14:65684400-65689400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:65686400-65691400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:65687200-65691600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:65687400-65689000	Weak transcription	Fetal Intestine Small	intestine
13	chr14:65687800-65688800	Weak transcription	Fetal Intestine Large	intestine
14	chr14:65688200-65688400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:65688200-65688400	Enhancers	Brain Hippocampus Middle	brain
16	chr14:65688200-65689200	Enhancers	NHLF	lung
17	chr14:65688200-65689400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:65688200-65690000	Enhancers	Brain Cingulate Gyrus	brain
19	chr14:65688200-65690200	Enhancers	GM12878-XiMat	blood
20	chr14:65688200-65690800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:65688200-65696400	Enhancers	Primary B cells from peripheral blood	blood

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