Variant report

Variant	rs2870138
Chromosome Location	chr11:55888254-55888255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs11227518	1.00[CEU][hapmap]
rs12099295	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12270268	1.00[CEU][hapmap]
rs17527401	1.00[CEU][hapmap]
rs17527710	0.89[EUR][1000 genomes]
rs17527788	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17527850	0.91[EUR][1000 genomes]
rs17527864	0.91[EUR][1000 genomes]
rs17528782	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17528803	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17530318	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17530360	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17530416	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17530423	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17531417	1.00[CEU][hapmap]
rs17597589	1.00[CEU][hapmap]
rs17597625	1.00[CEU][hapmap]
rs17597646	1.00[CEU][hapmap]
rs17598017	1.00[CEU][hapmap]
rs17598045	1.00[CEU][hapmap]
rs17598094	1.00[CEU][hapmap]
rs17599457	1.00[CEU][hapmap]
rs17599471	1.00[CEU][hapmap]
rs17599899	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17599913	0.91[EUR][1000 genomes]
rs17600692	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17600784	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17600820	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17600939	1.00[CEU][hapmap]
rs17601361	1.00[CEU][hapmap]
rs17601459	1.00[CEU][hapmap]
rs17603011	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17603260	1.00[CEU][hapmap]
rs17610726	1.00[CEU][hapmap]
rs17613345	1.00[CEU][hapmap]
rs1947923	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2170446	1.00[CEU][hapmap]
rs2449138	0.94[EUR][1000 genomes]
rs2512932	0.80[CEU][hapmap];0.94[EUR][1000 genomes]
rs2512961	1.00[CEU][hapmap]
rs28421520	1.00[EUR][1000 genomes]
rs28537497	1.00[EUR][1000 genomes]
rs28688517	1.00[EUR][1000 genomes]
rs4338547	1.00[CEU][hapmap]
rs55696205	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55833459	0.91[EUR][1000 genomes]
rs56057397	0.83[EUR][1000 genomes]
rs56176720	0.91[EUR][1000 genomes]
rs56178210	0.91[EUR][1000 genomes]
rs56208265	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56301431	0.91[EUR][1000 genomes]
rs56370444	0.91[EUR][1000 genomes]
rs56393785	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402650	0.89[EUR][1000 genomes]
rs61746167	1.00[EUR][1000 genomes]
rs61887074	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887088	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887089	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887090	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887091	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887092	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887137	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61887142	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61887143	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61888467	0.87[EUR][1000 genomes]
rs61888468	0.94[EUR][1000 genomes]
rs61888469	0.94[EUR][1000 genomes]
rs61888470	0.94[EUR][1000 genomes]
rs61888471	0.94[EUR][1000 genomes]
rs61888472	0.94[EUR][1000 genomes]
rs61888473	0.94[EUR][1000 genomes]
rs61888545	0.94[EUR][1000 genomes]
rs61888546	0.94[EUR][1000 genomes]
rs61889622	0.87[EUR][1000 genomes]
rs61889973	0.94[EUR][1000 genomes]
rs61889974	0.94[EUR][1000 genomes]
rs61889975	0.94[EUR][1000 genomes]
rs61891189	1.00[EUR][1000 genomes]
rs61891190	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891191	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891194	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891195	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891196	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61891197	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891198	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891199	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891201	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891202	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891203	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891205	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891206	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891209	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61891210	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891211	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61896235	0.91[EUR][1000 genomes]
rs61896236	0.89[EUR][1000 genomes]
rs61896237	0.91[EUR][1000 genomes]
rs61896238	0.91[EUR][1000 genomes]
rs61896240	0.91[EUR][1000 genomes]
rs61896241	0.91[EUR][1000 genomes]
rs61896242	0.84[EUR][1000 genomes]
rs61896244	0.91[EUR][1000 genomes]
rs61896245	0.91[EUR][1000 genomes]
rs61896247	0.91[EUR][1000 genomes]
rs61896248	0.91[EUR][1000 genomes]
rs61896249	0.91[EUR][1000 genomes]
rs61896250	0.91[EUR][1000 genomes]
rs61896251	0.91[EUR][1000 genomes]
rs61896253	0.91[EUR][1000 genomes]
rs61896254	0.91[EUR][1000 genomes]
rs61896255	0.91[EUR][1000 genomes]
rs61896256	0.91[EUR][1000 genomes]
rs61896257	0.91[EUR][1000 genomes]
rs61896258	0.91[EUR][1000 genomes]
rs61896259	0.91[EUR][1000 genomes]
rs61896960	0.91[EUR][1000 genomes]
rs61896961	0.91[EUR][1000 genomes]
rs61896962	0.91[EUR][1000 genomes]
rs61896963	0.91[EUR][1000 genomes]
rs61896964	0.91[EUR][1000 genomes]
rs61896965	0.91[EUR][1000 genomes]
rs61896966	0.91[EUR][1000 genomes]
rs7102893	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104912	0.92[EUR][1000 genomes]
rs7109136	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109807	0.91[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110317	1.00[CEU][hapmap]
rs7110689	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112887	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7113176	0.90[CEU][hapmap]
rs7113418	1.00[CEU][hapmap]
rs7113601	0.92[EUR][1000 genomes]
rs7114852	0.91[EUR][1000 genomes]
rs7114865	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119253	1.00[CEU][hapmap]
rs7125690	1.00[CEU][hapmap]
rs7128453	0.94[EUR][1000 genomes]
rs7131505	0.92[EUR][1000 genomes]
rs7131616	0.92[EUR][1000 genomes]
rs7925870	0.91[EUR][1000 genomes]
rs7926784	0.91[EUR][1000 genomes]
rs7929811	0.91[EUR][1000 genomes]
rs7931694	0.91[EUR][1000 genomes]
rs7935009	0.91[EUR][1000 genomes]
rs7936720	1.00[CEU][hapmap]
rs7937610	0.91[EUR][1000 genomes]
rs7942859	0.91[EUR][1000 genomes]
rs7942981	0.91[EUR][1000 genomes]
rs7943492	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7945499	0.91[EUR][1000 genomes]
rs7948567	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949262	0.91[EUR][1000 genomes]
rs9665861	1.00[CEU][hapmap]
rs9666086	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	esv2752628	chr11:55682604-55948184	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
9	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv832160	chr11:55780185-55916798	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
11	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1036290	chr11:55807948-55934985	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
13	esv2754280	chr11:55823576-55927591	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
14	esv2752700	chr11:55830265-55896015	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
15	nsv468575	chr11:55847945-55937954	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
16	nsv555095	chr11:55847945-55937954	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
17	esv2761676	chr11:55872090-55888493	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
18	esv3410489	chr11:55872880-55890198	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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