Variant report

Variant	rs28707596
Chromosome Location	chr8:10158289-10158290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10086995	1.00[ASN][1000 genomes]
rs10098384	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10098637	1.00[ASN][1000 genomes]
rs10101352	1.00[EUR][1000 genomes]
rs10101698	1.00[ASN][1000 genomes]
rs10111805	1.00[ASN][1000 genomes]
rs11249991	1.00[ASN][1000 genomes]
rs11774051	1.00[ASN][1000 genomes]
rs11778030	1.00[ASN][1000 genomes]
rs17151609	1.00[ASN][1000 genomes]
rs2004677	1.00[ASN][1000 genomes]
rs2004679	1.00[ASN][1000 genomes]
rs28399330	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28526848	1.00[ASN][1000 genomes]
rs28602752	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2975689	1.00[ASN][1000 genomes]
rs2975704	1.00[ASN][1000 genomes]
rs2975705	1.00[ASN][1000 genomes]
rs4841325	1.00[ASN][1000 genomes]
rs55836840	1.00[ASN][1000 genomes]
rs66533014	1.00[ASN][1000 genomes]
rs7000550	1.00[ASN][1000 genomes]
rs7812334	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv518309	chr8:10156025-10159985	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10144400-10167000	Weak transcription	Right Ventricle	heart
2	chr8:10148200-10159800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:10149400-10163400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:10151000-10160000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:10151400-10177000	Weak transcription	Fetal Intestine Small	intestine
6	chr8:10151400-10178800	Weak transcription	Spleen	Spleen
7	chr8:10153400-10167000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:10154400-10163200	Weak transcription	Esophagus	oesophagus
9	chr8:10155000-10159000	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:10157200-10177600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:10157400-10161000	Enhancers	Fetal Brain Male	brain
12	chr8:10158000-10177400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr8:10158200-10159200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr8:10158200-10159400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:10158200-10159400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr8:10158200-10159400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:10158200-10160200	Enhancers	Fetal Brain Female	brain
18	chr8:10158200-10161000	Enhancers	Brain Germinal Matrix	brain
19	chr8:10158200-10163400	Weak transcription	Primary T cells from cord blood	blood

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