Variant report

Variant	rs28712563
Chromosome Location	chr8:10575636-10575637
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10086247	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10088387	1.00[AMR][1000 genomes]
rs10099183	1.00[AMR][1000 genomes]
rs10106138	1.00[AMR][1000 genomes]
rs10109388	1.00[AMR][1000 genomes]
rs10111185	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11250059	1.00[AMR][1000 genomes]
rs11250063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984917	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11989282	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12546210	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28562927	1.00[AMR][1000 genomes]
rs28613894	1.00[AMR][1000 genomes]
rs6987514	1.00[AMR][1000 genomes]
rs6993755	1.00[AMR][1000 genomes]
rs6998635	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7824572	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7825310	1.00[AMR][1000 genomes]
rs7831365	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7833521	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1021048	chr8:10504395-10591896	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
6	nsv527184	chr8:10530037-10589913	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1028266	chr8:10537081-10586112	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv1034829	chr8:10537081-10591896	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1032725	chr8:10561962-10585683	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1022582	chr8:10571218-10636162	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv539468	chr8:10571218-10636162	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10570800-10575800	Enhancers	Lung	lung
2	chr8:10572000-10583000	Weak transcription	Liver	Liver
3	chr8:10574200-10575800	Enhancers	Placenta	Placenta
4	chr8:10574200-10579400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:10574200-10579600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:10574200-10579600	Weak transcription	NHEK	skin
7	chr8:10574400-10579600	Weak transcription	Esophagus	oesophagus
8	chr8:10574400-10579800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:10574800-10584200	Weak transcription	Hela-S3	cervix
10	chr8:10575000-10581800	Weak transcription	Adipose Nuclei	Adipose
11	chr8:10575200-10583000	Weak transcription	Spleen	Spleen
12	chr8:10575400-10580000	Weak transcription	HUVEC	blood vessel
13	chr8:10575600-10575800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
14	chr8:10575600-10576800	Weak transcription	Right Atrium	heart
15	chr8:10575600-10583600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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