Variant report

Variant	rs28717377
Chromosome Location	chr4:86727644-86727645
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11942819	1.00[ASN][1000 genomes]
rs28648954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345363	0.91[ASN][1000 genomes]
rs7692726	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86701000-86728800	Weak transcription	Right Ventricle	heart
2	chr4:86718200-86728400	Weak transcription	Left Ventricle	heart
3	chr4:86718200-86733800	Weak transcription	Gastric	stomach
4	chr4:86719400-86730800	Weak transcription	Primary B cells from cord blood	blood
5	chr4:86722000-86731400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:86722200-86728600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:86726400-86727800	Enhancers	Fetal Muscle Leg	muscle
8	chr4:86726400-86728000	Enhancers	Fetal Kidney	kidney
9	chr4:86726600-86728600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:86727000-86727800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:86727000-86728800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:86727000-86729200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr4:86727000-86729200	Enhancers	Fetal Stomach	stomach
14	chr4:86727000-86730400	Enhancers	NHDF-Ad	bronchial
15	chr4:86727200-86728600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:86727200-86728600	Enhancers	Osteobl	bone
17	chr4:86727200-86728800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:86727200-86728800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:86727200-86728800	Enhancers	Adipose Nuclei	Adipose
20	chr4:86727200-86728800	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:86727400-86728600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:86727400-86728600	Weak transcription	HSMMtube	muscle
23	chr4:86727400-86730200	Enhancers	HSMM	muscle
24	chr4:86727400-86730800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr4:86727600-86727800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr4:86727600-86729800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:86727600-86729800	Enhancers	HUVEC	blood vessel

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