Variant report

Variant	rs28719598
Chromosome Location	chr8:10943884-10943885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10091993	0.88[ASN][1000 genomes]
rs10099881	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10108304	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10108618	0.85[ASN][1000 genomes]
rs10109101	0.81[EUR][1000 genomes]
rs10113735	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11986748	0.81[EUR][1000 genomes]
rs11991121	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11991716	0.85[ASN][1000 genomes]
rs12542383	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17723229	0.80[ASN][1000 genomes]
rs2409694	0.85[ASN][1000 genomes]
rs28510951	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28722721	0.85[ASN][1000 genomes]
rs2898258	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4262293	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4840542	0.85[ASN][1000 genomes]
rs55676920	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55813668	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59724806	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60134032	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6601559	0.85[ASN][1000 genomes]
rs6601560	0.85[ASN][1000 genomes]
rs66475020	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6982381	0.85[ASN][1000 genomes]
rs6999969	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7014291	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7463505	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7812573	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820860	0.85[ASN][1000 genomes]
rs7835318	0.85[ASN][1000 genomes]
rs9329235	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9657519	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10925600-10944400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:10942200-10944400	Enhancers	Fetal Heart	heart
3	chr8:10943000-10948400	Weak transcription	Gastric	stomach
4	chr8:10943800-10944200	Enhancers	Brain Anterior Caudate	brain

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