Variant report

Variant	rs28721966
Chromosome Location	chr15:78490926-78490927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28408435	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28437725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28604437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28674481	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28676476	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28706083	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28781283	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3816254	0.86[ASN][1000 genomes]
rs8041851	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv904430	chr15:78466127-78507316	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78470400-78493800	Weak transcription	Brain Substantia Nigra	brain
2	chr15:78487000-78493600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:78487600-78495400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr15:78487600-78495400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:78487600-78495600	Weak transcription	Right Atrium	heart
6	chr15:78487800-78494200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:78488000-78493200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:78488400-78497000	Weak transcription	Spleen	Spleen
9	chr15:78488600-78492200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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