Variant report

Variant	rs28727287
Chromosome Location	chr7:101494383-101494384
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101457659..101461443-chr7:101493217..101497871,6	MCF-7	breast:
2	chr7:101492252..101496908-chr7:101497174..101502895,8	K562	blood:
3	chr7:101488351..101490093-chr7:101494145..101496604,2	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57093449	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60464978	1.00[ASN][1000 genomes]
rs62463718	1.00[ASN][1000 genomes]
rs62463724	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv521041	chr7:101458144-101496391	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101466800-101498400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:101470000-101496600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:101476200-101500000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:101490000-101498400	Weak transcription	Right Ventricle	heart
5	chr7:101490200-101498600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:101490800-101494600	Weak transcription	Thymus	Thymus
7	chr7:101490800-101496400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:101490800-101496400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:101490800-101496800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:101490800-101496800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:101490800-101497000	Weak transcription	Left Ventricle	heart
12	chr7:101490800-101497400	Weak transcription	Spleen	Spleen
13	chr7:101490800-101498400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:101490800-101498400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:101490800-101498400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr7:101490800-101498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:101490800-101499200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:101490800-101499400	Weak transcription	Fetal Lung	lung
19	chr7:101490800-101499400	Weak transcription	Hela-S3	cervix
20	chr7:101490800-101499400	Weak transcription	Osteobl	bone
21	chr7:101490800-101499600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:101490800-101499600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:101490800-101499600	Weak transcription	HSMMtube	muscle
24	chr7:101491000-101494800	Weak transcription	Fetal Stomach	stomach
25	chr7:101491000-101496400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:101491000-101496800	Weak transcription	K562	blood
27	chr7:101491000-101497000	Weak transcription	Fetal Muscle Leg	muscle
28	chr7:101491000-101499200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:101491000-101499400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:101491000-101499400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:101491000-101499400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:101491800-101497000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr7:101491800-101497000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:101491800-101499400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr7:101491800-101499600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr7:101492000-101497000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr7:101492000-101497200	Weak transcription	Primary T cells from cord blood	blood
38	chr7:101492000-101497800	Weak transcription	A549	lung
39	chr7:101492000-101499600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:101492000-101499600	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr7:101492200-101495600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:101492200-101499200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr7:101492200-101499800	Weak transcription	Psoas Muscle	Psoas
44	chr7:101492400-101496400	Weak transcription	Dnd41	blood
45	chr7:101492400-101498600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr7:101492600-101497000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr7:101492600-101498200	Weak transcription	Colonic Mucosa	Colon
48	chr7:101492600-101499200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:101492800-101496400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr7:101493000-101497400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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