Variant report

Variant	rs28733677
Chromosome Location	chr4:107242231-107242232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107237524..107239037-chr4:107241153..107242940,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145348	Chromatin interaction
ENSG00000164022	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13246713	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34439423	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35389440	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35588446	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6945000	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6945365	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7791003	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7792708	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs939906	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1819960	chr4:107216320-107246136	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107238600-107245800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:107238600-107258000	Weak transcription	Gastric	stomach
3	chr4:107238600-107258400	Weak transcription	Spleen	Spleen
4	chr4:107238600-107258600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:107238600-107259600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:107238600-107259600	Weak transcription	Pancreas	Pancrea
7	chr4:107238800-107247000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr4:107238800-107247000	Weak transcription	Fetal Thymus	thymus
9	chr4:107238800-107248000	Weak transcription	Ovary	ovary
10	chr4:107238800-107259000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:107239000-107243400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:107239000-107245600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:107239000-107247000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:107239000-107248200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:107239000-107252400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:107239000-107252800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:107239000-107259200	Weak transcription	Fetal Brain Male	brain
18	chr4:107239200-107243200	Weak transcription	Small Intestine	intestine
19	chr4:107239200-107245800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr4:107239200-107246800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr4:107239200-107247000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr4:107239200-107247000	Weak transcription	Fetal Brain Female	brain
23	chr4:107239200-107247200	Weak transcription	Fetal Kidney	kidney
24	chr4:107239200-107247600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr4:107239200-107248000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr4:107239200-107248800	Weak transcription	Fetal Heart	heart
27	chr4:107239200-107258400	Weak transcription	Aorta	Aorta
28	chr4:107239200-107259400	Weak transcription	Psoas Muscle	Psoas
29	chr4:107239400-107245800	Weak transcription	A549	lung
30	chr4:107239400-107246200	Weak transcription	Fetal Lung	lung
31	chr4:107239400-107246400	Weak transcription	Primary B cells from cord blood	blood
32	chr4:107239400-107246400	Weak transcription	Placenta	Placenta
33	chr4:107239400-107247000	Weak transcription	Adipose Nuclei	Adipose
34	chr4:107239400-107247000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:107239400-107247000	Weak transcription	Colonic Mucosa	Colon
36	chr4:107239400-107247000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr4:107239400-107247000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr4:107239400-107247400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr4:107239400-107248000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr4:107239400-107248200	Weak transcription	Brain Angular Gyrus	brain
41	chr4:107239400-107248200	Weak transcription	Brain Hippocampus Middle	brain
42	chr4:107239400-107248600	Weak transcription	HSMMtube	muscle
43	chr4:107239400-107255200	Weak transcription	Stomach Mucosa	stomach
44	chr4:107239600-107247600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr4:107239600-107248000	Weak transcription	Colon Smooth Muscle	Colon
46	chr4:107239600-107249200	Weak transcription	NHLF	lung
47	chr4:107239800-107246200	Weak transcription	NH-A	brain
48	chr4:107239800-107247400	Weak transcription	HMEC	breast
49	chr4:107239800-107247600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr4:107240000-107243600	Weak transcription	Muscle Satellite Cultured Cells	--

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