Variant report

Variant	rs28735633
Chromosome Location	chr11:18156306-18156307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59284430	1.00[AMR][1000 genomes]
rs60051094	1.00[AMR][1000 genomes]
rs60069681	1.00[AMR][1000 genomes]
rs60105598	1.00[AMR][1000 genomes]
rs61412856	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	esv11709	chr11:18138662-18200717	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv971990	chr11:18153921-18164912	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18154200-18156800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:18155600-18156400	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr11:18156200-18156400	Enhancers	Esophagus	oesophagus
4	chr11:18156200-18156600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:18156200-18156800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:18156200-18157000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:18156200-18157400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:18156200-18157400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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