Variant report

Variant	rs28740171
Chromosome Location	chr14:81356259-81356260
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11564117	1.00[AFR][1000 genomes]
rs11564214	1.00[AFR][1000 genomes]
rs12423682	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12423983	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12425167	0.84[AMR][1000 genomes]
rs12425561	1.00[AFR][1000 genomes]
rs12426643	1.00[AFR][1000 genomes]
rs17458808	1.00[AFR][1000 genomes]
rs17461387	1.00[AFR][1000 genomes]
rs17483919	1.00[AFR][1000 genomes]
rs17559478	0.82[AMR][1000 genomes]
rs17559800	0.84[AMR][1000 genomes]
rs17560267	0.85[AMR][1000 genomes]
rs1874558	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2173134	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28370602	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28370606	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4767962	1.00[AFR][1000 genomes]
rs535458	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs545385	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs549790	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs566044	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81321600-81382200	Weak transcription	Left Ventricle	heart
2	chr14:81329200-81359400	Weak transcription	HSMM	muscle
3	chr14:81336600-81358600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:81337200-81357400	Weak transcription	Primary T cells from cord blood	blood
5	chr14:81339600-81359000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:81344400-81357400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr14:81345200-81386200	Weak transcription	Aorta	Aorta
8	chr14:81346600-81358200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:81347200-81358200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:81348200-81369200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr14:81348400-81357200	Weak transcription	A549	lung
12	chr14:81349200-81357200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:81349800-81374800	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:81351200-81380600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr14:81351400-81398400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr14:81351800-81372800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:81351800-81380000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr14:81351800-81382000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:81352000-81357200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:81352000-81357800	Weak transcription	Adipose Nuclei	Adipose
21	chr14:81352200-81356400	Weak transcription	Fetal Thymus	thymus
22	chr14:81352200-81372800	Weak transcription	Thymus	Thymus
23	chr14:81352400-81357400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:81353200-81361200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:81355200-81384600	Weak transcription	Hela-S3	cervix
26	chr14:81355400-81358400	Strong transcription	Dnd41	blood
27	chr14:81356200-81356400	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr14:81356200-81356400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:81356200-81356400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr14:81356200-81371200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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