Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10003439	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10005908	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10009146	0.88[EUR][1000 genomes]
rs10011444	0.87[EUR][1000 genomes]
rs10019035	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10520281	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1344621	0.91[EUR][1000 genomes]
rs1365622	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17362255	0.92[ASN][1000 genomes]
rs28382357	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2877818	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55690716	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62332188	0.88[EUR][1000 genomes]
rs6811079	0.88[EUR][1000 genomes]
rs6817069	0.86[EUR][1000 genomes]
rs6820915	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6842619	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6844275	0.88[EUR][1000 genomes]
rs7671048	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7695663	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9998916	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv881376	chr4:175466101-175513812	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175461400-175474200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:175466600-175484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:175471200-175474000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:175471600-175473400	Enhancers	Placenta	Placenta
5	chr4:175471600-175476600	Weak transcription	Stomach Mucosa	stomach
6	chr4:175471800-175474200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:175471800-175474200	Weak transcription	NHDF-Ad	bronchial
8	chr4:175472200-175475400	Weak transcription	Fetal Stomach	stomach

Quick Search: