Variant report

Variant	rs2874865
Chromosome Location	chr4:143412583-143412584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10008498	0.83[AMR][1000 genomes]
rs10011782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12108640	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1391099	0.92[AMR][1000 genomes]
rs1425531	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1425533	0.94[EUR][1000 genomes]
rs1425536	0.94[EUR][1000 genomes]
rs1425537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1489581	0.85[AMR][1000 genomes]
rs17016163	0.83[AMR][1000 genomes]
rs17016175	0.85[AMR][1000 genomes]
rs17016306	0.93[EUR][1000 genomes]
rs1817970	0.90[AMR][1000 genomes]
rs1834391	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113996	0.95[EUR][1000 genomes]
rs2113997	0.94[EUR][1000 genomes]
rs2322795	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2874841	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28822497	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3844178	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3863128	0.89[AMR][1000 genomes]
rs3913163	0.85[AMR][1000 genomes]
rs4956444	0.85[AMR][1000 genomes]
rs4975308	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60924405	0.95[EUR][1000 genomes]
rs713071	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9308151	0.90[AMR][1000 genomes]
rs976564	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143397400-143414800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143401800-143418600	Weak transcription	Fetal Heart	heart
3	chr4:143410400-143414800	Weak transcription	HMEC	breast

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