Variant report

Variant	rs28749775
Chromosome Location	chr4:143828449-143828450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 186 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs10004713	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10010316	0.88[EUR][1000 genomes]
rs10011348	0.86[EUR][1000 genomes]
rs10014390	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017013	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017804	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10019031	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10024265	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10026166	0.85[EUR][1000 genomes]
rs10028292	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10030770	0.95[EUR][1000 genomes]
rs10032057	0.81[EUR][1000 genomes]
rs10032156	0.80[EUR][1000 genomes]
rs10033548	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034074	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10049511	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10050319	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10084818	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1012011	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1012012	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10212852	0.81[EUR][1000 genomes]
rs10213025	0.81[EUR][1000 genomes]
rs10519675	0.85[EUR][1000 genomes]
rs11932563	0.81[EUR][1000 genomes]
rs11936427	0.81[EUR][1000 genomes]
rs11936467	0.84[EUR][1000 genomes]
rs11938835	0.81[EUR][1000 genomes]
rs11943509	0.81[EUR][1000 genomes]
rs13101590	0.84[EUR][1000 genomes]
rs13101986	0.81[EUR][1000 genomes]
rs13114894	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13115045	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13116365	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13121251	0.82[ASN][1000 genomes]
rs13122950	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124363	0.86[EUR][1000 genomes]
rs13126927	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128465	0.81[EUR][1000 genomes]
rs13139051	0.81[EUR][1000 genomes]
rs13139834	0.80[EUR][1000 genomes]
rs13140271	0.81[EUR][1000 genomes]
rs13141166	0.86[EUR][1000 genomes]
rs13141176	0.86[EUR][1000 genomes]
rs13145393	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13147030	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13147901	0.81[EUR][1000 genomes]
rs13151684	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435685	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1372236	0.82[ASN][1000 genomes]
rs1372237	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372238	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1372239	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1441413	0.82[ASN][1000 genomes]
rs1441414	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1441420	0.84[EUR][1000 genomes]
rs1441421	0.86[EUR][1000 genomes]
rs1441423	0.86[EUR][1000 genomes]
rs1510134	0.81[EUR][1000 genomes]
rs1510136	0.84[EUR][1000 genomes]
rs1510137	0.83[EUR][1000 genomes]
rs1510139	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588407	0.81[EUR][1000 genomes]
rs1605953	0.81[EUR][1000 genomes]
rs1605954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1605955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016873	0.90[EUR][1000 genomes]
rs17017012	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17017081	0.83[EUR][1000 genomes]
rs17678304	0.85[EUR][1000 genomes]
rs1876938	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876939	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1899319	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912393	0.83[EUR][1000 genomes]
rs2003851	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083619	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120843	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120844	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2136644	0.81[EUR][1000 genomes]
rs2166187	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2322908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28390284	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28404663	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28460827	0.81[EUR][1000 genomes]
rs28493626	0.81[EUR][1000 genomes]
rs28497592	0.81[EUR][1000 genomes]
rs28516045	0.86[EUR][1000 genomes]
rs28560068	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577925	0.85[EUR][1000 genomes]
rs28603287	0.86[EUR][1000 genomes]
rs28609754	0.86[EUR][1000 genomes]
rs28625957	0.81[EUR][1000 genomes]
rs28689569	0.90[EUR][1000 genomes]
rs28693771	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2874907	0.90[EUR][1000 genomes]
rs28789215	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28814581	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28814625	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28849788	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28850637	0.85[EUR][1000 genomes]
rs28854016	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34011238	0.86[EUR][1000 genomes]
rs34499804	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34596213	0.86[EUR][1000 genomes]
rs34815588	0.86[EUR][1000 genomes]
rs34959108	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35582432	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35668471	0.85[EUR][1000 genomes]
rs4414905	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4690706	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690708	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690709	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4690711	0.83[EUR][1000 genomes]
rs4690712	0.81[EUR][1000 genomes]
rs4690733	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4690734	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690736	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690738	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4690739	0.88[EUR][1000 genomes]
rs4690744	0.83[EUR][1000 genomes]
rs56027920	0.86[EUR][1000 genomes]
rs56283150	0.86[EUR][1000 genomes]
rs62330374	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6537135	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6537136	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66682110	0.83[EUR][1000 genomes]
rs6815888	0.81[EUR][1000 genomes]
rs6818484	0.95[EUR][1000 genomes]
rs6820975	0.81[EUR][1000 genomes]
rs6822869	0.81[EUR][1000 genomes]
rs6824743	0.90[EUR][1000 genomes]
rs6826496	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6827913	0.80[EUR][1000 genomes]
rs6833501	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833521	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6834625	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6834860	0.88[EUR][1000 genomes]
rs6837806	0.81[EUR][1000 genomes]
rs6840593	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844759	0.95[EUR][1000 genomes]
rs6845018	0.81[EUR][1000 genomes]
rs6847097	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849626	0.90[EUR][1000 genomes]
rs6850278	0.90[EUR][1000 genomes]
rs6852412	0.90[EUR][1000 genomes]
rs716878	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs732600	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732601	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655380	0.85[EUR][1000 genomes]
rs7656332	0.81[EUR][1000 genomes]
rs7660391	0.86[EUR][1000 genomes]
rs7660803	0.86[EUR][1000 genomes]
rs7666854	0.81[EUR][1000 genomes]
rs7668116	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7668378	0.81[EUR][1000 genomes]
rs7668605	0.81[EUR][1000 genomes]
rs7670901	0.85[EUR][1000 genomes]
rs7673332	0.81[EUR][1000 genomes]
rs7681654	0.86[EUR][1000 genomes]
rs7683234	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7683364	0.95[EUR][1000 genomes]
rs7683834	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7683962	0.95[EUR][1000 genomes]
rs7688031	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689077	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7689462	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7690592	0.86[EUR][1000 genomes]
rs7691325	0.86[EUR][1000 genomes]
rs7692119	0.81[EUR][1000 genomes]
rs7692881	0.81[EUR][1000 genomes]
rs7696326	0.85[EUR][1000 genomes]
rs7699632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877032	0.90[EUR][1000 genomes]
rs9308153	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308154	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9308155	0.88[EUR][1000 genomes]
rs9308156	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9308157	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9308162	0.81[EUR][1000 genomes]
rs9683718	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884401	0.86[EUR][1000 genomes]
rs9999108	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10580	chr4:143794158-143856359	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143822600-143831200	Weak transcription	Stomach Smooth Muscle	stomach

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