Variant report

Variant	rs28756248
Chromosome Location	chr15:79489982-79489983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16970537	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758389	chr15:79355237-79518769	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
2	esv2760042	chr15:79355237-79518769	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79487600-79490400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:79488600-79490400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:79489000-79490200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr15:79489000-79490400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr15:79489000-79490400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr15:79489200-79490400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr15:79489200-79490600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr15:79489400-79490200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr15:79489400-79490400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:79489400-79490400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:79489400-79490600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr15:79489600-79490000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:79489600-79490200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr15:79489800-79490400	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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