Variant report

Variant	rs28757741
Chromosome Location	chr15:77222694-77222695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77195051..77197848-chr15:77221697..77224553,2	MCF-7	breast:
2	chr15:77222222..77225627-chr15:77232795..77236028,3	K562	blood:
3	chr15:77194744..77199863-chr15:77220881..77225601,7	MCF-7	breast:
4	chr15:77213948..77217003-chr15:77220696..77223782,5	K562	blood:
5	chr15:77209000..77210645-chr15:77221529..77223671,2	K562	blood:
6	chr15:77208994..77210693-chr15:77221866..77223836,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117906	Chromatin interaction
ENSG00000140386	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12101854	1.00[EUR][1000 genomes]
rs16968490	0.89[ASW][hapmap];1.00[GIH][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16968545	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2629032	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28502726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28574883	1.00[EUR][1000 genomes]
rs28804114	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs55682754	1.00[EUR][1000 genomes]
rs55737539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57365998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57366798	1.00[EUR][1000 genomes]
rs58934799	1.00[EUR][1000 genomes]
rs59572944	1.00[EUR][1000 genomes]
rs61024611	1.00[EUR][1000 genomes]
rs7163296	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes]
rs7168603	0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024627	1.00[EUR][1000 genomes]
rs74024634	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024639	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024642	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042617	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77220800-77223000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:77221200-77223000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:77221200-77223400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:77221600-77223200	Weak transcription	Brain Anterior Caudate	brain
5	chr15:77221600-77223600	Weak transcription	Left Ventricle	heart
6	chr15:77221800-77223000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:77221800-77223000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:77221800-77223200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:77222200-77223000	Enhancers	K562	blood
10	chr15:77222200-77223200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:77222200-77223200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr15:77222200-77223400	Enhancers	Fetal Intestine Small	intestine
13	chr15:77222400-77223400	Enhancers	Fetal Intestine Large	intestine

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